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25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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AICDA
activation induced cytidine deaminase
Chromosome 12 Β· 12p13.31
NCBI Gene: 57379Ensembl: ENSG00000111732.12HGNC: HGNC:13203UniProt: Q546Y9
275PubMed Papers
21Diseases
0Drugs
36Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingregulation of nuclear cell cycle DNA replicationpositive regulation of gene expression via chromosomal CpG island demethylationprotein-containing complexhyper-IgM syndrome type 2genetic disorderhyper-IgM syndromechronic lymphocytic leukemia
✦AI Summary

AICDA encodes activation-induced cytidine deaminase (AID), a single-stranded DNA-specific enzyme critical for adaptive immunity. AID catalyzes cytidine-to-uridine deamination within immunoglobulin variable and switch regions, initiating somatic hypermutation (SHM) and class-switch recombination (CSR)β€”two essential processes for generating high-affinity, isotype-diversified antibodies 1. During transcription of immunoglobulin loci, AID converts cytosine to uracil; the resulting deoxyuracil lesions are processed through error-prone DNA repair pathways to generate point mutations and isotype switching 2. AID expression is tightly regulated in germinal center B cells through CD40 signaling and transcriptional factors including Pax5 and Irf8, while posttranslational modifications regulate AID activity and nuclear-cytoplasmic localization 3. Transcription-coupled AID activity requires ELOF1-stabilized RNA polymerase II pausing to provide a platform for both damage induction and repair 4. Biallelic AICDA mutations cause autosomal recessive hyper-IgM syndrome type 2 (HIGM2), characterized by impaired CSR and SHM, while heterozygous nuclear export signal domain variants cause autosomal dominant HIGM2 with variable SHM defects 5. Beyond antibody diversification, AID may participate in DNA demethylation and epigenetic regulation 6.

Sources cited
1
AID converts cytidine to uridine to initiate somatic hypermutation in Ig variable regions
PMID: 17576170
2
AID produces diversity by converting cytosine to uracil within immunoglobulin loci; deoxyuracil is mutagenic and processed through error-prone DNA repair
PMID: 20510733
3
AID expression is regulated by CD40 signaling and transcription factors (Pax5, HoxC4, E47, Irf8) and negative modulators (Blimp1, Id2); posttranslational modifications regulate AID activity and localization
PMID: 18197815
4
ELOF1-associated RNA polymerase II pausing is required for transcription-coupled AID targeting and DNA damage at antibody genes; ELOF1 deficiency impairs class switch recombination and somatic hypermutation
PMID: 40049162
5
Biallelic AICDA variants cause autosomal recessive HIGM2; heterozygous variants in the nuclear export signal domain cause autosomal dominant HIGM2 with impaired CSR and variable SHM
PMID: 38363477
6
AID plays a role in epigenetic modifications and DNA demethylation beyond its canonical functions in SHM and class switching
PMID: 15661023
Disease Associationsβ“˜21
hyper-IgM syndrome type 2Open Targets
0.83Strong
genetic disorderOpen Targets
0.19Weak
hyper-IgM syndromeOpen Targets
0.17Weak
chronic lymphocytic leukemiaOpen Targets
0.11Weak
diffuse large B-cell lymphomaOpen Targets
0.11Weak
cancerOpen Targets
0.11Weak
acute lymphoblastic leukemiaOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
common variable immunodeficiencyOpen Targets
0.10Weak
hepatocellular carcinomaOpen Targets
0.10Suggestive
isolated agammaglobulinemiaOpen Targets
0.09Suggestive
infectionOpen Targets
0.09Suggestive
BENTA diseaseOpen Targets
0.09Suggestive
lymphomaOpen Targets
0.09Suggestive
type 1 diabetes mellitusOpen Targets
0.09Suggestive
myeloid sarcomaOpen Targets
0.09Suggestive
immunodeficiency 18Open Targets
0.09Suggestive
immunodeficiency, common variable, 3Open Targets
0.09Suggestive
agammaglobulinemia 8, autosomal dominantOpen Targets
0.09Suggestive
Alzheimer diseaseOpen Targets
0.09Suggestive
Immunodeficiency with hyper-IgM 2UniProt
Pathogenic Variants36
NM_020661.4(AICDA):c.274C>T (p.Arg92Ter)Pathogenic
Hyper-IgM syndrome type 2
β˜…β˜…β˜†β˜†2026β†’ Residue 92
NM_020661.4(AICDA):c.259T>C (p.Cys87Arg)Pathogenic
not provided|Hyper-IgM syndrome type 2
β˜…β˜…β˜†β˜†2026β†’ Residue 87
NM_020661.4(AICDA):c.441C>A (p.Cys147Ter)Pathogenic
Hyper-IgM syndrome type 2|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 147
NM_020661.4(AICDA):c.260G>C (p.Cys87Ser)Pathogenic
Hyper-IgM syndrome type 2|AICDA-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 87
NM_020661.4(AICDA):c.568C>T (p.Arg190Ter)Pathogenic
not provided|Hyper-IgM syndrome type 2
β˜…β˜…β˜†β˜†2025β†’ Residue 190
NM_020661.4(AICDA):c.334C>T (p.Arg112Cys)Pathogenic
not provided|Hyper-IgM syndrome type 2|AICDA-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 112
NM_020661.4(AICDA):c.416T>C (p.Met139Thr)Pathogenic
not provided|Hyper-IgM syndrome type 2
β˜…β˜…β˜†β˜†2025β†’ Residue 139
NM_020661.4(AICDA):c.169G>A (p.Val57Met)Pathogenic
not provided|Hyper-IgM syndrome type 2
β˜…β˜…β˜†β˜†2025β†’ Residue 57
NM_020661.4(AICDA):c.295C>T (p.Arg99Ter)Pathogenic
Hyper-IgM syndrome type 2
β˜…β˜…β˜†β˜†2024β†’ Residue 99
NM_020661.4(AICDA):c.251G>A (p.Trp84Ter)Pathogenic
Hyper-IgM syndrome type 2|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 84
NM_020661.4(AICDA):c.70C>T (p.Arg24Trp)Pathogenic
Hyper-IgM syndrome type 2
β˜…β˜…β˜†β˜†2024β†’ Residue 24
NM_020661.4(AICDA):c.415A>G (p.Met139Val)Pathogenic
Hyper-IgM syndrome type 2|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 139
NM_020661.4(AICDA):c.403C>T (p.Gln135Ter)Pathogenic
Hyper-IgM syndrome type 2
β˜…β˜…β˜†β˜†2023β†’ Residue 135
NM_020661.4(AICDA):c.203G>A (p.Trp68Ter)Pathogenic
Hyper-IgM syndrome type 2|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 68
NM_020661.4(AICDA):c.342C>A (p.Tyr114Ter)Pathogenic
Hyper-IgM syndrome type 2
β˜…β˜†β˜†β˜†2025β†’ Residue 114
NM_020661.4(AICDA):c.8+1G>CLikely pathogenic
Hyper-IgM syndrome type 2
β˜…β˜†β˜†β˜†2025
NM_020661.4(AICDA):c.408dup (p.Ala137fs)Pathogenic
Hyper-IgM syndrome type 2
β˜…β˜†β˜†β˜†2025β†’ Residue 137
NM_020661.4(AICDA):c.427+2T>CLikely pathogenic
Hyper-IgM syndrome type 2
β˜…β˜†β˜†β˜†2025
NM_020661.4(AICDA):c.71G>A (p.Arg24Gln)Likely pathogenic
Hyper-IgM syndrome type 2
β˜…β˜†β˜†β˜†2025β†’ Residue 24
NM_020661.4(AICDA):c.293T>G (p.Leu98Arg)Likely pathogenic
Hyper-IgM syndrome type 2
β˜…β˜†β˜†β˜†2024β†’ Residue 98
View on ClinVar β†—
Related Genes
UNGProtein interaction92%CTNNBL1Protein interaction90%BCL6Protein interaction90%LOC102723407Protein interaction89%PAX5Protein interaction88%APOBEC4Protein interaction87%
Tissue Expression6 tissues
Lung
100%
Ovary
50%
Brain
46%
Liver
42%
Bone Marrow
21%
Heart
0%
Gene Interaction Network
Click a node to explore
AICDAUNGCTNNBL1BCL6LOC102723407PAX5APOBEC4
PROTEIN STRUCTURE
Preparing viewer…
PDB5W0R Β· 2.40 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.14LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.77 [0.53–1.14]
RankingsWhere AICDA stands among ~20K protein-coding genes
  • #1,324of 20,598
    Most Researched275 Β· top 10%
  • #1,638of 5,498
    Most Pathogenic Variants36
  • #11,881of 17,882
    Most Constrained (LOEUF)1.14
Genes detectedAICDA
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Regulation of aicda expression and AID activity: relevance to somatic hypermutation and class switch DNA recombination.
PMID: 18197815
Crit Rev Immunol Β· 2007
1.00
2
Transcription-coupled AID deamination damage depends on ELOF1-associated RNA polymerase II.
PMID: 40049162
Mol Cell Β· 2025
0.90
3
A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth.
PMID: 36949074
Nat Commun Β· 2023
0.80
4
Epigenetic changes by EZH2 inhibition increase translocations in B cells with high AID activity or DNA repair deficiency.
PMID: 40825195
Blood Β· 2025
0.76
5
A Novel Heterozygous Variant in AICDA Impairs Ig Class Switching and Somatic Hypermutation in Human B Cells and is Associated with Autosomal Dominant HIGM2 Syndrome.
PMID: 38363477
J Clin Immunol Β· 2024
0.70