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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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AP4M1
adaptor related protein complex 4 subunit mu 1
Chromosome 7 · 7q22.1
NCBI Gene: 9179Ensembl: ENSG00000221838.12HGNC: HGNC:574UniProt: C9JC87
53PubMed Papers
21Diseases
0Drugs
62Pathogenic Variants
FUNCTIONAL ROLE
Transporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingprotein domain specific bindingautophagosome assemblyprotein targetingSpastic paraplegiaSevere intellectual disability and progressive spastic paraplegiaIntellectual disabilityneurodegenerative disease
✦AI Summary

AP4M1 encodes the μ-subunit of adaptor protein complex 4 (AP-4), a non-clathrin coat component mediating vesicular transport from the trans-Golgi network (TGN) 1. AP4M1 specifically recognizes and binds tyrosine-based sorting signals on cargo proteins, directing proteins to the endosomal-lysosomal system and basolateral membranes in epithelial cells 1. AP-4 deficiency causes hereditary spastic paraplegia 50 (SPG50), an ultra-rare childhood-onset disorder characterized by progressive spastic paraplegia, developmental delay, intellectual disability, postnatal microcephaly (83%), and intractable epilepsy (66%) 2. Brain imaging reveals thin corpus callosum (90%), ventriculomegaly (65%), and white-matter abnormalities (68%) 2. SPG50 shares a common phenotype with other AP-4 subunit mutations (SPG47, SPG51, SPG52), termed 'AP-4 deficiency syndrome,' with onset typically before age 3 years and progressive motor decline, with 54% wheelchair-dependent by mean age 13.4 years 2. Biallelic loss-of-function variants cause disease, with over 70 unique variants identified 2. Recent clinical advances include intrathecal AAV9/AP4M1 gene therapy, which demonstrated safety and disease stabilization in preclinical studies and a phase 1 patient trial, offering promise for this previously untreatable condition 34.

Sources cited
1
AP4M1 component function in AP-4 complex and role in TGN-to-endosomal trafficking; SPG50 as ultrarare childhood-onset neurological disorder
PMID: 23897027
2
Comprehensive clinical phenotype of AP-4 deficiency syndrome including spasticity, developmental delay, intellectual disability, microcephaly, epilepsy, and neuroimaging features; core features across all AP-4 subunit mutations
PMID: 32979048
3
Preclinical safety and efficacy of intrathecal AAV9/AP4M1 gene therapy in Ap4m1-KO mice and toxicology studies
PMID: 36951961
4
Phase 1 clinical trial demonstrating safety and tolerability of AAV-based AP4M1 gene therapy with preliminary evidence of disease stabilization
PMID: 38942994
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ21
Spastic paraplegiaOpen Targets
0.75Strong
Severe intellectual disability and progressive spastic paraplegiaOpen Targets
0.75Strong
Intellectual disabilityOpen Targets
0.49Moderate
neurodegenerative diseaseOpen Targets
0.48Moderate
genetic disorderOpen Targets
0.45Moderate
AP-4 deficiency syndromeOpen Targets
0.45Moderate
hereditary spastic paraplegiaOpen Targets
0.41Moderate
Inherited congenital spastic tetraplegiaOpen Targets
0.37Weak
spastic quadriplegic cerebral palsyOpen Targets
0.37Weak
Abnormality of the nervous systemOpen Targets
0.34Weak
microcephalyOpen Targets
0.26Weak
Global developmental delayOpen Targets
0.26Weak
Brain atrophyOpen Targets
0.26Weak
CNS hypomyelinationOpen Targets
0.26Weak
Hypoplasia of the corpus callosumOpen Targets
0.26Weak
Alazami-Yuan syndromeOpen Targets
0.18Weak
hepatocellular carcinomaOpen Targets
0.07Suggestive
Adult-onset autosomal recessive sideroblastic anemiaOpen Targets
0.06Suggestive
FTH1-related iron overloadOpen Targets
0.05Suggestive
hemochromatosis type 5Open Targets
0.05Suggestive
Spastic paraplegia 50, autosomal recessiveUniProt
Pathogenic Variants62
NM_004722.4(AP4M1):c.32del (p.Lys11fs)Pathogenic
Hereditary spastic paraplegia 50|Intellectual disability|not provided
★★☆☆2025→ Residue 11
NM_004722.4(AP4M1):c.955T>C (p.Cys319Arg)Pathogenic
not specified|Hereditary spastic paraplegia 50|Spastic paraplegia|Inborn genetic diseases|not provided
★★☆☆2025→ Residue 319
NM_004722.4(AP4M1):c.916C>T (p.Arg306Ter)Pathogenic
Hereditary spastic paraplegia 50|not provided|Intellectual disability|Hereditary spastic paraplegia|Spastic paraplegia
★★☆☆2025→ Residue 306
NM_004722.4(AP4M1):c.842_843del (p.Val281fs)Pathogenic
not provided|Hereditary spastic paraplegia 50
★★☆☆2025→ Residue 281
NM_004722.4(AP4M1):c.142del (p.Val48fs)Pathogenic
Hereditary spastic paraplegia 50
★★☆☆2025→ Residue 48
NM_004722.4(AP4M1):c.10C>T (p.Gln4Ter)Pathogenic
Intellectual disability|Hereditary spastic paraplegia 50|not provided
★★☆☆2025→ Residue 4
NM_004722.4(AP4M1):c.577G>A (p.Glu193Lys)Pathogenic
Hereditary spastic paraplegia 50|Spastic paraplegia|AP-4 deficiency syndrome
★★☆☆2025→ Residue 193
NM_004722.4(AP4M1):c.1012C>T (p.Arg338Ter)Pathogenic
Hereditary spastic paraplegia 50|Spastic paraplegia|not provided
★★☆☆2025→ Residue 338
NM_004722.4(AP4M1):c.218dup (p.Asn73fs)Pathogenic
not provided|Spastic paraplegia|Hereditary spastic paraplegia 50
★★☆☆2025→ Residue 73
NM_004722.4(AP4M1):c.952C>T (p.Arg318Ter)Pathogenic
CNS hypomyelination;Brain atrophy;Microcephaly;Hypoplasia of the corpus callosum;Global developmental delay|Hereditary spastic paraplegia 50|not provided|Spastic paraplegia|AP4M1-related disorder
★★☆☆2025→ Residue 318
NM_004722.4(AP4M1):c.1137+1G>TPathogenic
not provided|AP4M1-related disorder|Hereditary spastic paraplegia 50|Spastic paraplegia
★★☆☆2024
NM_004722.4(AP4M1):c.547C>T (p.Gln183Ter)Pathogenic
Hereditary spastic paraplegia 50
★★☆☆2024→ Residue 183
NM_004722.4(AP4M1):c.1117C>T (p.Gln373Ter)Pathogenic
Hereditary spastic paraplegia 50|Intellectual disability|Spastic paraplegia|not provided
★★☆☆2023→ Residue 373
NM_004722.4(AP4M1):c.1317G>A (p.Trp439Ter)Pathogenic
Hereditary spastic paraplegia 50
★★☆☆2023→ Residue 439
NM_004722.4(AP4M1):c.930-1G>CLikely pathogenic
Hereditary spastic paraplegia 50
★★☆☆2023
NM_004722.4(AP4M1):c.1129del (p.Leu377fs)Pathogenic
not provided
★★☆☆2023→ Residue 377
NM_004722.4(AP4M1):c.923C>G (p.Ser308Ter)Pathogenic
not provided|Hereditary spastic paraplegia 50
★★☆☆2022→ Residue 308
NM_004722.4(AP4M1):c.802C>T (p.Arg268Ter)Pathogenic
Hereditary spastic paraplegia 50|Spastic paraplegia
★★☆☆2022→ Residue 268
NM_004722.4(AP4M1):c.893T>C (p.Leu298Pro)Pathogenic
Hereditary spastic paraplegia 50
★☆☆☆2026→ Residue 298
NM_004722.4(AP4M1):c.1320dup (p.Arg441fs)Pathogenic
Hereditary spastic paraplegia 50
★☆☆☆2025→ Residue 441
View on ClinVar ↗
Related Genes
AP2A1Protein interaction100%AP2A2Protein interaction100%AP1B1Protein interaction100%AP2B1Protein interaction100%AP1G1Protein interaction100%ARF1Protein interaction100%
Tissue Expression6 tissues
Ovary
100%
Heart
81%
Lung
80%
Bone Marrow
67%
Brain
52%
Liver
43%
Gene Interaction Network
Click a node to explore
AP4M1AP2A1AP2A2AP1B1AP2B1AP1G1ARF1
PROTEIN STRUCTURE
Preparing viewer…
PDB3L81 · 1.60 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.11LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.89 [0.72–1.11]
RankingsWhere AP4M1 stands among ~20K protein-coding genes
  • #8,394of 20,598
    Most Researched53
  • #1,146of 5,498
    Most Pathogenic Variants62 · top quartile
  • #11,317of 17,882
    Most Constrained (LOEUF)1.11
Genes detectedAP4M1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Intrathecal AAV9/AP4M1 gene therapy for hereditary spastic paraplegia 50 shows safety and efficacy in preclinical studies.
PMID: 36951961
J Clin Invest · 2023
1.00
2
Hereditary spastic paraplegia: clinico-pathologic features and emerging molecular mechanisms.
PMID: 23897027
Acta Neuropathol · 2013
0.90
3
Defining the clinical, molecular and imaging spectrum of adaptor protein complex 4-associated hereditary spastic paraplegia.
PMID: 32979048
Brain · 2020
0.80
4
Identification of immune-inflammation targets for intracranial aneurysms: a multiomics and epigenome-wide study integrating summary-data-based Mendelian randomization, single-cell-type expression analysis, and DNA methylation regulation.
PMID: 39051921
Int J Surg · 2025
0.70
5
AAV gene therapy for hereditary spastic paraplegia type 50: a phase 1 trial in a single patient.
PMID: 38942994
Nat Med · 2024
0.60