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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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APBA2
amyloid beta precursor protein binding family A member 2
Chromosome 15 · 15q13.1
NCBI Gene: 321Ensembl: ENSG00000034053.16HGNC: HGNC:579UniProt: Q59G28
71PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingGolgi apparatusidentical protein bindingamyloid-beta binding
✦AI Summary

APBA2 (amyloid beta precursor protein binding family A member 2) is a neuronal adaptor protein primarily involved in synaptic transmission and APP processing. The protein functions as an adaptor in synaptic vesicle exocytosis by binding to presynaptic components and interacting directly with neurexin-1α (NRXN1α) at the presynaptic membrane 1. APBA2 facilitates neuronal protein trafficking and is essential for proper synaptic function 2. Mechanistically, APBA2 contains PDZ domains that enable binding to neurexin and other synaptic proteins, regulating their membrane trafficking and stabilization 2. The gene possesses a neuronal-specific promoter whose activity is regulated by DNA methylation and transcription factors like Pax5 3. Disease relevance is substantial across multiple neuropsychiatric conditions. APBA2 is implicated in Alzheimer's disease pathogenesis, where altered expression levels in brain regions including hippocampus and entorhinal cortex correlate with disease progression 45. Rare nonsynonymous mutations and copy number variations in APBA2 significantly contribute to autism spectrum disorder susceptibility, with maternally inherited microduplications within 15q13.1 and compound heterozygous mutations identified in affected sibships 16. Additionally, APBA2 expression patterns serve as potential diagnostic biomarkers in neurological disorders 4.

Sources cited
1
APBA2 encodes a neuronal adaptor protein essential to synaptic transmission that interacts directly with NRXN1 at the presynaptic membrane; implicated in autism via microduplications and coding variants
PMID: 20029827
2
APBA2/MINT2 N723S mutation impairs NRXN1α stabilization and trafficking, affecting presynaptic neuronal function and synaptic transmission
PMID: 30988517
3
APBA2 possesses a neuronal promoter regulated by DNA methylation and Pax5 binding; overexpression decreases amyloid-β production relevant to Alzheimer's disease
PMID: 22222501
4
APBA2 gene expression is altered in Alzheimer's disease brains, with decreased expression associated with APOE4 allele in AD patients
PMID: 28164769
5
APBA2 shows tissue-specific expression changes in Alzheimer's disease brains and correlates with APOE4 status
PMID: 38267766
6
APBA2 is among key genes with significant enrichment of rare CNVs in autism spectrum disorder susceptibility
PMID: 32081867
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
STXBP1Protein interaction100%APBB1Protein interaction100%APBB2Protein interaction100%CASKProtein interaction94%NECAB3Protein interaction93%TAMALINProtein interaction85%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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APBA2STXBP1APBB1APBB2CASKNECAB3TAMALIN
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q59G28
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.52Moderately Constrained
pLIⓘ
0.78Intermediate
Observed/Expected LoF0.39 [0.29–0.52]
RankingsWhere APBA2 stands among ~20K protein-coding genes
  • #6,609of 20,598
    Most Researched71
  • #3,256of 17,882
    Most Constrained (LOEUF)0.52 · top quartile
Genes detectedAPBA2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Integrative analyses of bulk and single-cell transcriptomics reveals the infiltration and crosstalk of cancer-associated fibroblasts as a novel predictor for prognosis and microenvironment remodeling in intrahepatic cholangiocarcinoma.
PMID: 38702814
J Transl Med · 2024
1.00
2
Change in INSR, APBA2 and IDE Gene Expressions in Brains of Alzheimer's Disease Patients.
PMID: 28164769
Curr Alzheimer Res · 2017
0.90
3
Promoter characterization and genomic organization of the human X11β gene APBA2.
PMID: 22222501
Neuroreport · 2012
0.80
4
Copy number and sequence variants implicate APBA2 as an autism candidate gene.
PMID: 20029827
Autism Res · 2009
0.70
5
An integrated analysis of rare CNV and exome variation in Autism Spectrum Disorder using the Infinium PsychArray.
PMID: 32081867
Sci Rep · 2020
0.60