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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ASNS
asparagine synthetase (glutamine-hydrolyzing)
Chromosome 7 Β· 7q21.3
NCBI Gene: 440Ensembl: ENSG00000070669.18HGNC: HGNC:753UniProt: P08243
176PubMed Papers
21Diseases
0Drugs
167Pathogenic Variants
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
L-asparagine biosynthetic processasparagine synthase (glutamine-hydrolyzing) activityprotein bindingcellular response to glucose starvationcongenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndromeCongenital microcephaly-severe encephalopathy-progressive cerebral atrophy syndromegenetic disorderNeurodevelopmental delay
✦AI Summary

ASNS (asparagine synthetase) is a ligase enzyme catalyzing L-asparagine biosynthesis from glutamine and aspartate, primarily localized to the cytosol 1. The enzyme plays critical roles in cellular survival under amino acid starvation, including glucose deprivation responses [GO Annotations]. ASNS expression is transcriptionally regulated by multiple factors including ATF4 and ZBTB1 under nutrient stress conditions 21. Beyond basal metabolic function, ASNS exhibits significant oncogenic properties across multiple cancer types. Elevated ASNS expression and asparagine biosynthesis promote tumor progression in osteosarcoma, breast cancer brain metastasis, hepatocellular carcinoma, and pancreatic ductal adenocarcinoma through metabolic reprogramming pathways 3145. ASNS upregulation represents an adaptive escape mechanism enabling tumor cells to circumvent glutamine metabolism inhibition and asparaginase therapy 56. Clinically, ASNS hypermethylation in gastric and hepatic cancers sensitizes cells to asparaginase therapy, suggesting methylation status as a predictive biomarker 7. Germline ASNS mutations cause asparagine synthetase deficiency associated with severe neurological phenotypes including congenital microcephaly and progressive cerebral atrophy [Disease Associations]. The gene's dual role in normal amino acid metabolism and cancer-associated metabolic reprogramming positions ASNS as both a therapeutic target and potential biomarker in cancer treatment.

Sources cited
1
RBM39-mediated upregulation of asparagine synthesis via ASNS in hepatocellular carcinoma creates positive feedback loop sustaining arginine-driven oncogenic metabolism
PMID: 37804830
2
ASNS hypermethylation sensitizes gastric and hepatic cancer subsets to asparaginase therapy, identified through metabolomic profiling of 928 cancer cell lines
PMID: 31068703
3
NAT10 enhances ASNS mRNA stability through ac4C modification, with ATF4 inducing ASNS transcription to promote asparagine biosynthesis in osteosarcoma progression
PMID: 39293390
4
FAM50A-C9ORF78 complex enhances ASNS transcription to promote asparagine production essential for breast cancer brain metastasis
PMID: 40531994
5
PDAC cells upregulate ASNS expression as metabolic adaptation to glutamine antagonist DON; ASNS levels inversely correlate with therapeutic efficacy
PMID: 37814011
6
ZBTB1 binds ASNS promoter to regulate asparagine synthesis under asparagine deprivation; ZBTB1 loss sensitizes leukemia cells to L-asparaginase
PMID: 32268116
7
ASNS represents adaptive metabolic escape mechanism enabling tumor cells to circumvent glutamine metabolism inhibition and maintain proliferation
PMID: 40598593
Disease Associationsβ“˜21
congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndromeOpen Targets
0.82Strong
Congenital microcephaly-severe encephalopathy-progressive cerebral atrophy syndromeOpen Targets
0.82Strong
genetic disorderOpen Targets
0.47Moderate
Neurodevelopmental delayOpen Targets
0.43Moderate
Abnormal cerebral morphologyOpen Targets
0.35Weak
cholelithiasisOpen Targets
0.31Weak
Neurodevelopmental abnormalityOpen Targets
0.29Weak
multiple sclerosisOpen Targets
0.27Weak
spinocerebellar ataxia, autosomal recessive 29Open Targets
0.27Weak
hepatocellular carcinomaOpen Targets
0.10Weak
Parkinson diseaseOpen Targets
0.10Weak
neoplasmOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
familial hemolytic anemiaOpen Targets
0.09Suggestive
osteosarcomaOpen Targets
0.09Suggestive
Genu varumOpen Targets
0.09Suggestive
acute lymphoblastic leukemiaOpen Targets
0.09Suggestive
acute myeloid leukemiaOpen Targets
0.08Suggestive
Genu valgumOpen Targets
0.08Suggestive
small cell lung carcinomaOpen Targets
0.07Suggestive
Asparagine synthetase deficiencyUniProt
Pathogenic Variants167
NM_001673.5(ASNS):c.1556G>A (p.Arg519His)Likely pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 519
NM_001673.5(ASNS):c.1270C>T (p.Arg424Ter)Pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 424
NM_001673.5(ASNS):c.187C>T (p.Arg63Ter)Pathogenic
not provided|ASNS-related disorder|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 63
NM_001673.5(ASNS):c.904-3_904-1delLikely pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025
NM_001673.5(ASNS):c.146G>A (p.Arg49Gln)Pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome|Neurodevelopmental delay|Pancreatic adenocarcinoma|Gastric cancer
β˜…β˜…β˜†β˜†2025β†’ Residue 49
NM_001673.5(ASNS):c.1649G>A (p.Arg550His)Pathogenic
Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome|Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 550
NM_001673.5(ASNS):c.1211G>A (p.Arg404His)Likely pathogenic
Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome|not provided|Spinocerebellar ataxia, autosomal recessive 29
β˜…β˜…β˜†β˜†2025β†’ Residue 404
NM_001673.5(ASNS):c.1393C>T (p.Arg465Ter)Pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 465
NM_001673.5(ASNS):c.1648C>T (p.Arg550Cys)Pathogenic
Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 550
NM_001673.5(ASNS):c.224A>G (p.Asn75Ser)Pathogenic
Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 75
NM_001673.5(ASNS):c.1084T>G (p.Phe362Val)Pathogenic
Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 362
NM_001673.5(ASNS):c.1456C>T (p.Gln486Ter)Pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 486
NM_001673.5(ASNS):c.17C>A (p.Ala6Glu)Pathogenic
Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 6
NM_001673.5(ASNS):c.2T>C (p.Met1Thr)Pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_001673.5(ASNS):c.1193A>C (p.Tyr398Ser)Pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 398
NM_001673.5(ASNS):c.97C>T (p.Arg33Cys)Pathogenic
not specified|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 33
NM_001673.5(ASNS):c.478del (p.Glu160fs)Pathogenic
Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 160
NM_001673.5(ASNS):c.1193_1196del (p.Tyr398fs)Pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 398
NM_001673.5(ASNS):c.1165G>T (p.Glu389Ter)Pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 389
NM_001673.5(ASNS):c.1138-1G>ALikely pathogenic
not provided|Congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome
β˜…β˜…β˜†β˜†2025
View on ClinVar β†—
Related Genes
EIF2AK4Protein interaction100%SLC3A2Protein interaction100%MTHFD2Protein interaction100%SHMT2Protein interaction99%PSPHProtein interaction99%ATF4Protein interaction99%
Tissue Expression6 tissues
Brain
100%
Lung
16%
Ovary
16%
Liver
5%
Bone Marrow
1%
Heart
0%
Gene Interaction Network
Click a node to explore
ASNSEIF2AK4SLC3A2MTHFD2SHMT2PSPHATF4
PROTEIN STRUCTURE
Preparing viewer…
PDB6GQ3 Β· 1.85 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.74LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.56 [0.42–0.74]
RankingsWhere ASNS stands among ~20K protein-coding genes
  • #2,476of 20,598
    Most Researched176 Β· top quartile
  • #445of 5,498
    Most Pathogenic Variants167 Β· top 10%
  • #5,872of 17,882
    Most Constrained (LOEUF)0.74
Genes detectedASNS
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Arginine reprograms metabolism in liver cancer via RBM39.
PMID: 37804830
Cell Β· 2023
1.00
2
The landscape of cancer cell line metabolism.
PMID: 31068703
Nat Med Β· 2019
0.90
3
Targeting NAT10 inhibits osteosarcoma progression via ATF4/ASNS-mediated asparagine biosynthesis.
PMID: 39293390
Cell Rep Med Β· 2024
0.80
4
Asparagine drives immune evasion in bladder cancer via RIG-I stability and type I IFN signaling.
PMID: 39964752
J Clin Invest Β· 2025
0.72
5
FAM50A drives breast cancer brain metastasis through interaction with C9ORF78 to enhance ʟ-asparagine production.
PMID: 40531994
Sci Adv Β· 2025
0.70