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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ATP23
ATP23 metallopeptidase and ATP synthase assembly factor homolog
Chromosome 12 · 12q14.1
NCBI Gene: 91419Ensembl: ENSG00000166896.10HGNC: HGNC:29452UniProt: Q9Y6H3
19PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Protease
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingplasma membranecell junctioncytosolgoutSjogren syndromemathematical abilityvertebral column disorder
✦AI Summary

ATP23 is a mitochondrial metallopeptidase with dual functions in ATP synthase biogenesis. Primarily, ATP23 processes the precursor form of ATP synthase subunit 6 (Atp6/subunit 6) by removing its targeting sequence 1. Beyond proteolytic processing, ATP23 functions as a chaperone facilitating assembly of the F(O) complex, coordinating with chaperone Atp10p to stabilize subunit 6 and enable its incorporation into the ATP synthase holoenzyme 12. The LRDK motif (residues 112-115) is critical for assembly function 2. ATP23 localizes to the mitochondrial inner membrane and is conserved across eukaryotes 13. In disease contexts, ATP23 expression patterns show clinical relevance: high ATP23 expression correlates with poor prognosis in glioblastoma 4, while reduced ATP23 in colorectal adenocarcinoma associates with immunosuppression through impaired T-cell oxidative phosphorylation and predicts worse outcomes 5. Additionally, ATP23 variants show association with red cell alloimmunization susceptibility in sickle cell disease patients 6. These findings indicate ATP23 functions beyond mitochondrial biogenesis as a potential prognostic biomarker in cancer and transfusion-related complications.

Sources cited
1
ATP23 is a metalloprotease with dual function in processing Atp6 precursor and assisting F(O) assembly of mitochondrial ATP synthase; functions as a chaperone working with Atp10p
PMID: 17135290
2
Atp23p and Atp10p coordinate as chaperones to regulate ATP synthase assembly; LRDK residues required for assembly function; increases subunit 6 stability
PMID: 33956347
3
ATP23 is an inner membrane protease involved in mitochondrial protein processing and assembly of protein complexes
PMID: 22495024
4
High ATP23 expression independently associates with poor prognosis in glioblastoma patients
PMID: 35406779
5
ATP23 is significantly lower in colorectal adenocarcinoma tumor tissues; higher ATP23 levels associate with improved survival; ATP23 inhibits cancer cell proliferation and migration; reduced ATP23 impairs oxidative phosphorylation in T cells contributing to immunosuppression
PMID: 41736753
6
ATP23 identified as potential gene driving genome-wide significant association with red cell alloimmunization in sickle cell disease patients
PMID: 38966903
Disease Associationsⓘ20
goutOpen Targets
0.30Weak
Sjogren syndromeOpen Targets
0.28Weak
mathematical abilityOpen Targets
0.25Weak
vertebral column disorderOpen Targets
0.23Weak
Myasthenia gravisOpen Targets
0.20Weak
breast benign neoplasmOpen Targets
0.19Weak
Abnormality of the skeletal systemOpen Targets
0.17Weak
ovarian neoplasmOpen Targets
0.17Weak
response to statinOpen Targets
0.17Weak
Intervertebral Disc DisplacementOpen Targets
0.16Weak
intelligenceOpen Targets
0.15Weak
amyotrophic lateral sclerosisOpen Targets
0.13Weak
response to stimulusOpen Targets
0.12Weak
ocular hypotensionOpen Targets
0.12Weak
adverse effectOpen Targets
0.12Weak
smoking cessationOpen Targets
0.11Weak
migraine disorderOpen Targets
0.11Weak
major depressive disorderOpen Targets
0.10Weak
autism spectrum disorderOpen Targets
0.10Weak
nicotine dependenceOpen Targets
0.10Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ATMProtein interaction98%POLD1Protein interaction95%MSH3Protein interaction95%CETN2Protein interaction91%ERCC8Protein interaction91%ERCC1Protein interaction91%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
40%
Liver
40%
Heart
28%
Ovary
27%
Lung
25%
Gene Interaction Network
Click a node to explore
ATP23ATMPOLD1MSH3CETN2ERCC8ERCC1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9Y6H3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.16LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.80 [0.56–1.16]
RankingsWhere ATP23 stands among ~20K protein-coding genes
  • #14,361of 20,598
    Most Researched19
  • #12,125of 17,882
    Most Constrained (LOEUF)1.16
Genes detectedATP23
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The metalloprotease encoded by ATP23 has a dual function in processing and assembly of subunit 6 of mitochondrial ATPase.
PMID: 17135290
Mol Biol Cell · 2007
1.00
2
Atp23p and Atp10p coordinate to regulate the assembly of yeast mitochondrial ATP synthase.
PMID: 33956347
FASEB J · 2021
0.90
3
Processing peptidases in mitochondria and chloroplasts.
PMID: 22495024
Biochim Biophys Acta · 2013
0.80
4
T1121G Point Mutation in the Mitochondrial Gene
PMID: 35216443
Int J Mol Sci · 2022
0.70
5
Transcriptomic Profiling of DNA Damage Response in Patient-Derived Glioblastoma Cells before and after Radiation and Temozolomide Treatment.
PMID: 35406779
Cells · 2022
0.60