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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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B3GNT5
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
Chromosome 3 · 3q27.1
NCBI Gene: 84002Ensembl: ENSG00000176597.13HGNC: HGNC:15684UniProt: Q9BYG0
19PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
central nervous system developmentprotein bindinglactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activityGolgi membranecancercervical carcinomapachyonychia congenitaliver cancer
✦AI Summary

B3GNT5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5) is a glycosyltransferase that catalyzes the synthesis of lacto- and neolacto-series glycosphingolipids (GSLs), particularly by converting lactosylceramide and neolactotetraosylceramide into higher-order structures like Lc3Cer and neolactopentaosylceramide 1. The enzyme functions primarily through its glycosyltransferase activity on Golgi membranes during glycosphingolipid biosynthesis 1. B3GNT5 is essential for early embryonic development, as homozygous B3gnt5-null mice exhibit pre-implantation lethality, highlighting its critical role in cell adhesion and differentiation 1. In cancer contexts, B3GNT5 overexpression significantly impacts malignancy across multiple tumor types. Elevated B3GNT5 correlates with poor survival in glioblastoma and thymoma, promotes cancer stem cell properties in basal-like breast cancer, and is associated with chemoresistance and epithelial-mesenchymal transition in various cancers 2 3 4 5. Clinically, B3GNT5-generated GSLs modulate immune responses by impairing HLA-I antigen presentation and CD8+ T cell activation, but paradoxically can function as decoy receptors for pathogenic toxins 6 7. These findings identify B3GNT5 as both a prognostic biomarker and potential therapeutic target for cancer and infectious diseases.

Sources cited
1
B3GNT5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5) is a glycosyltransferase that catalyzes the synthesis of lacto- and neolacto-series glycosphingolipids (GSLs), particularly by converting lactosylceramide and neolactotetraosylceramide into higher-order structures like Lc3Cer and neolactopentaosylceramide .
PMID: 19014510
2
Elevated B3GNT5 correlates with poor survival in glioblastoma and thymoma, promotes cancer stem cell properties in basal-like breast cancer, and is associated with chemoresistance and epithelial-mesenchymal transition in various cancers .
PMID: 32677340
3
Elevated B3GNT5 correlates with poor survival in glioblastoma and thymoma, promotes cancer stem cell properties in basal-like breast cancer, and is associated with chemoresistance and epithelial-mesenchymal transition in various cancers .
PMID: 37781041
4
Elevated B3GNT5 correlates with poor survival in glioblastoma and thymoma, promotes cancer stem cell properties in basal-like breast cancer, and is associated with chemoresistance and epithelial-mesenchymal transition in various cancers .
PMID: 35526049
5
Elevated B3GNT5 correlates with poor survival in glioblastoma and thymoma, promotes cancer stem cell properties in basal-like breast cancer, and is associated with chemoresistance and epithelial-mesenchymal transition in various cancers .
PMID: 40847295
6
Clinically, B3GNT5-generated GSLs modulate immune responses by impairing HLA-I antigen presentation and CD8+ T cell activation, but paradoxically can function as decoy receptors for pathogenic toxins .
PMID: 33271119
7
Clinically, B3GNT5-generated GSLs modulate immune responses by impairing HLA-I antigen presentation and CD8+ T cell activation, but paradoxically can function as decoy receptors for pathogenic toxins .
PMID: 39414978
Disease Associationsⓘ20
cancerOpen Targets
0.09Suggestive
cervical carcinomaOpen Targets
0.08Suggestive
pachyonychia congenitaOpen Targets
0.08Suggestive
liver cancerOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
breast cancerOpen Targets
0.07Suggestive
classic Hodgkin lymphomaOpen Targets
0.07Suggestive
Hodgkins lymphomaOpen Targets
0.07Suggestive
macroglobulinemia, Waldenstrom, 1Open Targets
0.06Suggestive
isolated agammaglobulinemiaOpen Targets
0.06Suggestive
nutritional deficiency diseaseOpen Targets
0.06Suggestive
immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemiaOpen Targets
0.06Suggestive
immunodeficiency 105Open Targets
0.06Suggestive
combined immunodeficiency with skin granulomasOpen Targets
0.06Suggestive
glioblastoma multiformeOpen Targets
0.05Suggestive
immunodeficiency 86Open Targets
0.05Suggestive
immunodeficiency 99 with hypogammaglobulinemia and autoimmune cytopeniasOpen Targets
0.05Suggestive
activated PI3K-delta syndromeOpen Targets
0.05Suggestive
severe combined immunodeficiency due to CARD11 deficiencyOpen Targets
0.05Suggestive
acute erythroleukemiaOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
B4GALT4Protein interaction96%B4GALT3Protein interaction93%GLB1Protein interaction91%B4GALT6Protein interaction91%B4GALT1Protein interaction80%B4GALT2Protein interaction80%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
22%
Brain
11%
Heart
5%
Ovary
5%
Liver
2%
Gene Interaction Network
Click a node to explore
B3GNT5B4GALT4B4GALT3GLB1B4GALT6B4GALT1B4GALT2
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9BYG0
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.57Moderately Constrained
pLIⓘ
0.86Intermediate
Observed/Expected LoF0.34 [0.21–0.57]
RankingsWhere B3GNT5 stands among ~20K protein-coding genes
  • #14,365of 20,598
    Most Researched19
  • #3,734of 17,882
    Most Constrained (LOEUF)0.57 · top quartile
Genes detectedB3GNT5
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The SPPL3-Defined Glycosphingolipid Repertoire Orchestrates HLA Class I-Mediated Immune Responses.
PMID: 33271119
Immunity · 2021
1.00
2
Role of glycosphingolipid biosynthesis coregulators in malignant progression of thymoma.
PMID: 37781041
Int J Biol Sci · 2023
0.90
3
B3GNT5 is a novel marker correlated with stem-like phenotype and poor clinical outcome in human gliomas.
PMID: 32677340
CNS Neurosci Ther · 2020
0.80
4
Elevated transcription and glycosylation of B3GNT5 promotes breast cancer aggressiveness.
PMID: 35526049
J Exp Clin Cancer Res · 2022
0.70
5
Fucosylation of glycoproteins and glycolipids: opposing roles in cholera intoxication.
PMID: 39414978
Nat Chem Biol · 2025
0.60