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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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BCKDHA
branched chain keto acid dehydrogenase E1 subunit alpha
Chromosome 19 · 19q13.2
NCBI Gene: 593Ensembl: ENSG00000248098.13HGNC: HGNC:986UniProt: P12694
109PubMed Papers
21Diseases
0Drugs
182Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
branched-chain 2-oxo acid dehydrogenase activityprotein bindingbranched-chain amino acid catabolic processbranched-chain alpha-keto acid decarboxylation to branched-chain acyl-CoAmaple syrup urine disease type 1Amaple syrup urine diseasegenetic disorderclassic maple syrup urine disease
✦AI Summary

BCKDHA encodes the E1α subunit of the mitochondrial branched-chain α-ketoacid dehydrogenase (BCKDH) complex, which catalyzes the first committed step in branched-chain amino acid (BCAA) catabolism 1. Together with BCKDHB, BCKDHA forms the E1 heterotetrameric complex that decarboxylates ketoacid derivatives of leucine, isoleucine, and valine to generate acyl-CoA and energy 1. The enzyme's activity is regulated through phosphorylation by BCKDK, which inactivates BCKDHA; notably, BCKDK regulates hepatic gluconeogenesis independent of BCKDHA-mediated BCAA catabolism 2. Biallelic BCKDHA mutations cause classic maple syrup urine disease (MSUD) type 1A, a severe inborn error of metabolism characterized by life-threatening neurologic crises and progressive brain injury 1. Gene replacement therapy using dual-function AAV9 vectors has shown therapeutic promise in preclinical models, preventing perinatal death and stabilizing disease biomarkers 1. Beyond MSUD, BCKDHA dysfunction is implicated in metabolic diseases including type 2 diabetes and obesity 3, where elevated circulating BCAAs associate with insulin resistance 3. Additionally, BCKDHA dephosphorylation promotes hepatocellular carcinoma progression 4, while genetic variation in BCKDHA influences heart failure risk and cardiac structure 5.

Sources cited
1
BCKDHA encodes the E1α subunit of the mitochondrial BCKDH complex that catalyzes the decarboxylation of ketoacids from branched-chain amino acids; biallelic mutations cause classic MSUD type 1A with neurologic consequences; gene replacement therapy with dual AAV9 vectors prevents perinatal death and stabilizes biomarkers
PMID: 40009698
2
BCKDK phosphorylation inactivates BCKDHA; BCKDK regulates hepatic gluconeogenesis through CREB and FOXO1 signaling independent of BCKDHA-mediated BCAA catabolism
PMID: 39389936
3
BCKDHA is a candidate gene for obesity and type 2 diabetes; elevated circulating BCAAs are associated with insulin resistance and worse metabolic health
PMID: 25287287
4
BCKDHA dephosphorylation driven by PPM1K stabilization promotes hepatocellular carcinoma progression under glutamine deprivation
PMID: 36417878
5
Genetic variation in BCKDHA and circulating branched-chain amino acids are associated with heart failure risk and cardiac structure changes
PMID: 36376295
Disease Associationsⓘ21
maple syrup urine disease type 1AOpen Targets
0.84Strong
maple syrup urine diseaseOpen Targets
0.73Strong
genetic disorderOpen Targets
0.51Moderate
classic maple syrup urine diseaseOpen Targets
0.37Weak
intermediate maple syrup urine diseaseOpen Targets
0.37Weak
intermittent maple syrup urine diseaseOpen Targets
0.37Weak
Intellectual disabilityOpen Targets
0.11Weak
atrial fibrillationOpen Targets
0.10Suggestive
androgenetic alopeciaOpen Targets
0.06Suggestive
neutropenia, severe congenital, 2, autosomal dominantOpen Targets
0.04Suggestive
X-linked severe congenital neutropeniaOpen Targets
0.04Suggestive
Blackfan-Diamond anemiaOpen Targets
0.04Suggestive
type 2 diabetes mellitusOpen Targets
0.04Suggestive
Recurrent infection due to specific granule deficiencyOpen Targets
0.04Suggestive
nonimmune chronic idiopathic neutropenia of adultsOpen Targets
0.04Suggestive
hair colorOpen Targets
0.04Suggestive
non-small cell lung carcinomaOpen Targets
0.04Suggestive
reticular dysgenesisOpen Targets
0.04Suggestive
neutropenia, severe congenital, 1, autosomal dominantOpen Targets
0.03Suggestive
autosomal recessive severe congenital neutropenia due to CSF3R deficiencyOpen Targets
0.03Suggestive
Maple syrup urine disease 1AUniProt
Pathogenic Variants182
NM_000709.4(BCKDHA):c.745G>A (p.Gly249Ser)Likely pathogenic
Maple syrup urine disease|not provided|Maple syrup urine disease type 1A
★★☆☆2026→ Residue 249
NM_000709.4(BCKDHA):c.1237dup (p.Tyr413fs)Pathogenic
Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2026→ Residue 413
NM_000709.4(BCKDHA):c.1312T>A (p.Tyr438Asn)Pathogenic
Maple syrup urine disease type 1A|Maple syrup urine disease|not provided|Inborn genetic diseases
★★☆☆2026→ Residue 438
NM_000709.4(BCKDHA):c.137C>A (p.Ser46Ter)Pathogenic
Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2026→ Residue 46
NM_000709.4(BCKDHA):c.288+1G>APathogenic
not provided|Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2026
NM_000709.4(BCKDHA):c.647-1G>CPathogenic
not provided|Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2026
NM_000709.4(BCKDHA):c.861_868del (p.Gly288fs)Pathogenic
Maple syrup urine disease type 1A|Maple syrup urine disease|not provided
★★☆☆2026→ Residue 288
NM_000709.4(BCKDHA):c.117del (p.Arg40fs)Pathogenic
not provided|Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2025→ Residue 40
NM_000709.4(BCKDHA):c.1234G>A (p.Val412Met)Pathogenic
Maple syrup urine disease|not provided|Maple syrup urine disease type 1A|Inborn genetic diseases
★★☆☆2025→ Residue 412
NM_000709.4(BCKDHA):c.979G>A (p.Glu327Lys)Pathogenic
Maple syrup urine disease|not provided|Maple syrup urine disease type 1A
★★☆☆2025→ Residue 327
NM_000709.4(BCKDHA):c.410_426dup (p.Gly143fs)Pathogenic
Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2025→ Residue 143
NM_000709.4(BCKDHA):c.868G>C (p.Gly290Arg)Likely pathogenic
Maple syrup urine disease type 1A
★★☆☆2025→ Residue 290
NM_000709.4(BCKDHA):c.164del (p.Pro55fs)Pathogenic
Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2025→ Residue 55
NM_000709.4(BCKDHA):c.349C>T (p.Arg117Cys)Likely pathogenic
Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2025→ Residue 117
NM_000709.4(BCKDHA):c.511del (p.Leu171fs)Pathogenic
Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2025→ Residue 171
NM_000709.4(BCKDHA):c.853G>C (p.Ala285Pro)Pathogenic
not provided|Maple syrup urine disease|Maple syrup urine disease type 1A|Cervical cancer
★★☆☆2025→ Residue 285
NM_000709.4(BCKDHA):c.288+9C>TPathogenic
Maple syrup urine disease|not provided|Maple syrup urine disease type 1A
★★☆☆2025
NM_000709.4(BCKDHA):c.117dup (p.Arg40fs)Pathogenic
not provided|Maple syrup urine disease|Maple syrup urine disease type 1A|Inborn genetic diseases|Likely inborn error of metabolism
★★☆☆2025→ Residue 40
NM_000709.4(BCKDHA):c.308T>C (p.Leu103Pro)Pathogenic
Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2025→ Residue 103
NM_000709.4(BCKDHA):c.794G>C (p.Arg265Pro)Pathogenic
Maple syrup urine disease|Maple syrup urine disease type 1A
★★☆☆2025→ Residue 265
View on ClinVar ↗
Related Genes
SLC25A44Shared pathway100%DBTProtein interaction100%DLSTProtein interaction100%OGDHProtein interaction100%DLATProtein interaction100%PDHBProtein interaction100%
Tissue Expression6 tissues
Heart
100%
Brain
57%
Liver
48%
Lung
35%
Ovary
34%
Bone Marrow
21%
Gene Interaction Network
Click a node to explore
BCKDHASLC25A44DBTDLSTOGDHDLATPDHB
PROTEIN STRUCTURE
Preparing viewer…
PDB2BFD · 1.39 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.09LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.84 [0.66–1.09]
RankingsWhere BCKDHA stands among ~20K protein-coding genes
  • #4,346of 20,598
    Most Researched109 · top quartile
  • #389of 5,498
    Most Pathogenic Variants182 · top 10%
  • #11,049of 17,882
    Most Constrained (LOEUF)1.09
Genes detectedBCKDHA
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
PMID: 40009698
Sci Transl Med · 2025
1.00
2
Genome-wide association and multi-trait analyses characterize the common genetic architecture of heart failure.
PMID: 36376295
Nat Commun · 2022
0.90
3
Branched-chain amino acid catabolism breaks glutamine addiction to sustain hepatocellular carcinoma progression.
PMID: 36417878
Cell Rep · 2022
0.80
4
Branched-chain amino acids in metabolic signalling and insulin resistance.
PMID: 25287287
Nat Rev Endocrinol · 2014
0.70
5
Targeting BCAT1 Combined with α-Ketoglutarate Triggers Metabolic Synthetic Lethality in Glioblastoma.
PMID: 35499760
Cancer Res · 2022
0.60