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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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BLOC1S3
biogenesis of lysosomal organelles complex 1 subunit 3
Chromosome 19 Β· 19q13.32
NCBI Gene: 388552Ensembl: ENSG00000189114.9HGNC: HGNC:20914UniProt: Q6QNY0
28PubMed Papers
21Diseases
0Drugs
5Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingeye developmentplatelet activationmelanosome transportHermansky-Pudlak syndrome 8Hermansky-Pudlak syndrome type 8Hermansky-Pudlak syndromeskin sensitivity to sun
✦AI Summary

BLOC1S3 is a subunit of the biogenesis of lysosomal organelles complex 1 (BLOC-1), which mediates biogenesis of lysosome-related organelles including melanosomes and platelet dense granules 1. As a BLOC-1 component, BLOC1S3 functions in intracellular vesicle trafficking and, in concert with the AP-3 complex, directs membrane protein cargos into vesicles for delivery to neurites and nerve terminals 2. BLOC1S3 mutations cause Hermansky-Pudlak syndrome type 8 (HPS-8), characterized by oculocutaneous albinism and platelet dysfunction 1. HPS-8 is clinically milder than other HPS forms, typically presenting with moderate albinism and bleeding diathesis without systemic complications like pulmonary fibrosis 3. Loss of BLOC1S3 function causes aberrant melanosomal protein localization, with increased trafficking of cargo proteins like TYRP1 to the plasma membrane 2. Additionally, BLOC1S3 variants show genome-wide association with late-onset Alzheimer disease (rs597668, P=6.45Γ—10⁻⁹), though clinical utility for disease prediction remains limited 4. These findings establish BLOC1S3 as essential for proper organellar biogenesis and melanosome organization.

Sources cited
1
BLOC1S3 is a BLOC-1 subunit; germline mutations cause HPS-8 with oculocutaneous albinism, platelet dysfunction, and visual defects
PMID: 16385460
2
BLOC1S3 mutations destabilize BLOC-1 complex and cause aberrant melanosomal protein localization in HPS patients
PMID: 22709368
3
HPS-8 presents with mild phenotype including moderate albinism and bleeding diathesis without pulmonary fibrosis or immunodeficiency
PMID: 32687635
4
BLOC1S3 variants show genome-wide significant association with late-onset Alzheimer disease
PMID: 20460622
5
BLOC1S3 is among genes screened in albinism cases and included in targeted sequencing panels for genetic disease diagnosis
PMID: 35488210
Disease Associationsβ“˜21
Hermansky-Pudlak syndrome 8Open Targets
0.70Moderate
Hermansky-Pudlak syndrome type 8Open Targets
0.50Moderate
Hermansky-Pudlak syndromeOpen Targets
0.48Moderate
skin sensitivity to sunOpen Targets
0.40Weak
Hermansky-Pudlak syndrome type 7Open Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.32Weak
Abnormality of skin pigmentationOpen Targets
0.29Weak
genetic disorderOpen Targets
0.19Weak
neoplasmOpen Targets
0.08Suggestive
infectionOpen Targets
0.07Suggestive
cancerOpen Targets
0.07Suggestive
Griscelli diseaseOpen Targets
0.06Suggestive
triple-negative breast cancerOpen Targets
0.06Suggestive
Tietz syndromeOpen Targets
0.05Suggestive
Griscelli disease type 3Open Targets
0.05Suggestive
Griscelli syndrome type 3Open Targets
0.05Suggestive
oculocutaneous albinism type 3Open Targets
0.05Suggestive
familial hyperlipidemiaOpen Targets
0.05Suggestive
Waardenburg syndrome, IIa 2FOpen Targets
0.05Suggestive
Waardenburg syndrome type 2Open Targets
0.05Suggestive
Hermansky-Pudlak syndrome 8UniProt
Pathogenic Variants5
NM_212550.5(BLOC1S3):c.444_467del (p.Gln150_Ala157del)Pathogenic
Hermansky-Pudlak syndrome 8
β˜†β˜†β˜†β˜†2020β†’ Residue 150
NM_212550.5(BLOC1S3):c.338_341del (p.Leu113fs)Pathogenic
Hermansky-Pudlak syndrome 8
β˜†β˜†β˜†β˜†2020β†’ Residue 113
NM_212550.5(BLOC1S3):c.385_403del (p.Ser129fs)Pathogenic
Hermansky-Pudlak syndrome 8
β˜†β˜†β˜†β˜†2020β†’ Residue 129
NM_212550.5(BLOC1S3):c.131C>A (p.Ser44Ter)Pathogenic
Hermansky-Pudlak syndrome 8
β˜†β˜†β˜†β˜†2017β†’ Residue 44
NM_212550.5(BLOC1S3):c.448del (p.Gln150fs)Pathogenic
Hermansky-Pudlak syndrome 8
β˜†β˜†β˜†β˜†2006β†’ Residue 150
View on ClinVar β†—
Related Genes
BCAS4Protein interaction100%VAMP2Protein interaction100%HPS1Protein interaction99%HPS5Protein interaction91%HPS6Protein interaction91%HPS3Protein interaction91%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
92%
Lung
87%
Brain
72%
Ovary
69%
Heart
59%
Gene Interaction Network
Click a node to explore
BLOC1S3BCAS4VAMP2HPS1HPS5HPS6HPS3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q6QNY0
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.84LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.13 [0.63–1.84]
RankingsWhere BLOC1S3 stands among ~20K protein-coding genes
  • #12,315of 20,598
    Most Researched28
  • #3,622of 5,498
    Most Pathogenic Variants5
  • #16,746of 17,882
    Most Constrained (LOEUF)1.84
Genes detectedBLOC1S3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PMID: 20301464
1.00
2
Cryo-EM structure of the BLOC-3 complex provides insights into the pathogenesis of Hermansky-Pudlak syndrome.
PMID: 40140412
Nat Commun Β· 2025
0.90
3
Genome-wide analysis of genetic loci associated with Alzheimer disease.
PMID: 20460622
JAMA Β· 2010
0.80
4
NGS-based targeted sequencing identified two novel variants in Southwestern Chinese families with oculocutaneous albinism.
PMID: 35488210
BMC Genomics Β· 2022
0.70
5
PMID: 30060521
Int J Mol Sci Β· 2018
0.60