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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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BTF3
basic transcription factor 3
Chromosome 5 · 5q13.2
NCBI Gene: 689Ensembl: ENSG00000145741.17HGNC: HGNC:1125UniProt: P20290
132PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTranscription FactorTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytoplasmprotein bindingnegative regulation of protein localization to endoplasmic reticulumcytosolAlzheimer diseaseParkinson diseaseneurodegenerative diseasemultiple sclerosis
✦AI Summary

BTF3 (basic transcription factor 3) is a multifunctional protein with dual roles in translation and transcription. As a component of the nascent polypeptide-associated complex (NACA), BTF3 prevents inappropriate endoplasmic reticulum (ER) targeting of non-secretory proteins by blocking signal recognition particle (SRP) interaction with nascent polypeptide chains 1. Additionally, BTF3 functions as a general transcription factor that forms stable complexes with RNA polymerase II to initiate transcription 2. BTF3 demonstrates significant disease relevance in hepatocellular carcinoma (HCC), where elevated expression correlates with poor prognosis. BTF3 promotes HCC progression through multiple mechanisms: transcriptional upregulation of PDCD2L, which suppresses p53 signaling 3, and activation of the FOXM1/GLUT1 axis to enhance glycolysis and cell proliferation 2. BTF3 is also overexpressed in prostate and gastric cancers, serving as a potential diagnostic and prognostic biomarker 45. In livestock, BTF3 functions as a candidate gene regulating intramuscular fat deposition and meat quality in pigs 6. Recent evidence suggests BTF3 participates in mitochondrial dynamics through CK2α'-mediated recruitment, promoting Mfn2 expression and neuroprotection in ischemic stroke models 1.

Sources cited
1
BTF3 is recruited by CK2α' complex to facilitate β-catenin nuclear translocation and activate Mfn2 transcription for mitochondrial fusion
PMID: 33602894
2
BTF3 regulates GLUT1 expression through FOXM1 transactivation to promote HCC proliferation and glycolysis
PMID: 37382415
3
BTF3 upregulates PDCD2L transcriptionally and inactivates p53 signaling in HCC progression
PMID: 39707202
4
BTF3 protein expression is increased 2-2.5 fold in malignant versus non-malignant prostate tissue and is a candidate biomarker
PMID: 24386364
5
BTF3 is abnormally upregulated in gastric cancer tissues and associated with poor prognosis and clinicopathological parameters
PMID: 38279435
6
BTF3 is identified as a key candidate gene governing intramuscular fat deposition and meat quality in pigs
PMID: 39742300
Disease Associationsⓘ20
Alzheimer diseaseOpen Targets
0.43Moderate
lysosomal storage diseaseOpen Targets
0.43Moderate
multiple sclerosisOpen Targets
0.43Moderate
neurodegenerative diseaseOpen Targets
0.43Moderate
Parkinson diseaseOpen Targets
0.43Moderate
dengue diseaseOpen Targets
0.37Weak
alcohol drinkingOpen Targets
0.17Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
prostate cancerOpen Targets
0.08Suggestive
posterior cortical atrophyOpen Targets
0.07Suggestive
placental retentionOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
gastric cancerOpen Targets
0.05Suggestive
hemoglobin D diseaseOpen Targets
0.05Suggestive
Hereditary persistence of fetal hemoglobin - beta-thalassemiaOpen Targets
0.05Suggestive
hereditary persistence of fetal hemoglobin-sickle cell disease syndromeOpen Targets
0.05Suggestive
dominant beta-thalassemiaOpen Targets
0.05Suggestive
Alpha-thalassemia - myelodysplastic syndromeOpen Targets
0.05Suggestive
alpha-thalassemia-myelodysplastic syndromeOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
RPL12Protein interaction100%RPL39Protein interaction100%RPL13AProtein interaction100%RPL38Protein interaction100%RPL27Protein interaction100%RPL29Protein interaction100%
Tissue Expression6 tissues
Ovary
100%
Brain
59%
Lung
53%
Bone Marrow
51%
Heart
48%
Liver
37%
Gene Interaction Network
Click a node to explore
BTF3RPL12RPL39RPL13ARPL38RPL27RPL29
PROTEIN STRUCTURE
Preparing viewer…
PDB3MCB · 1.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.93LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.57 [0.36–0.93]
RankingsWhere BTF3 stands among ~20K protein-coding genes
  • #3,512of 20,598
    Most Researched132 · top quartile
  • #8,516of 17,882
    Most Constrained (LOEUF)0.93
Genes detectedBTF3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
BTN3A3 evasion promotes the zoonotic potential of influenza A viruses.
PMID: 37380775
Nature · 2023
1.00
2
Small molecule induces mitochondrial fusion for neuroprotection via targeting CK2 without affecting its conventional kinase activity.
PMID: 33602894
Signal Transduct Target Ther · 2021
0.90
3
Pangenome and genome variation analyses of pigs unveil genomic facets for their adaptation and agronomic characteristics.
PMID: 39742300
Imeta · 2024
0.80
4
BTF3 affects hepatocellular carcinoma progression by transcriptionally upregulating PDCD2L and inactivating p53 signaling.
PMID: 39707202
Mol Med · 2024
0.70
5
BTF3 promotes proliferation and glycolysis in hepatocellular carcinoma by regulating GLUT1.
PMID: 37382415
Cancer Biol Ther · 2023
0.60