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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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C1R
complement C1r
Chromosome 12 Β· 12p13.31
NCBI Gene: 715Ensembl: ENSG00000159403.18HGNC: HGNC:1246UniProt: A0A3B3ISR2
88PubMed Papers
1Diseases
0Drugs
19Pathogenic Variants
FUNCTIONAL ROLE
Protease
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
serine-type endopeptidase activitycalcium ion bindingprotein bindingcomplement activation, classical pathwayEhlers-Danlos syndrome, periodontal type, 1
✦AI Summary

C1R encodes complement C1r, a serine protease that initiates the classical complement pathway by catalyzing the first enzymatic step of this immune cascade 123. C1R functions as part of the C1 complex, a multiprotein assembly that recognizes antigen-antibody complexes on pathogen surfaces 34. When C1q, the recognition subunit of C1, binds to IgG or IgM complexed with antigens, this interaction promotes C1R's autocatalytic activation through self-cleavage at a single Arg-Ile bond 561. Activated C1R then cleaves and activates C1S, the second protease in the classical pathway 57. The mechanism involves formation of a flexible Ca²⁺-dependent C1 complex where catalytic domains are strategically positioned within the C1q scaffold, though whether C1R activates C1S within single complexes or between neighboring complexes remains unclear 83. Beyond its canonical complement role, C1R has emerged as a plasma biomarker in sarcopenia, with elevated extracellular vesicle-associated C1R showing diagnostic potential 9. C1R deficiency is associated with periodontal Ehlers-Danlos syndrome type 1, highlighting its physiological importance 10.

Sources cited
1
C1R initiates classical complement pathway
PMID: 17996945
2
C1R role in complement cascade and immune response
PMID: 19473974
3
C1R mechanism and C1 complex structure
PMID: 29449492
4
C1R activation by antigen-antibody complexes
PMID: 34155115
5
C1R autocatalytic cleavage and C1S activation
PMID: 11445589
6
C1R activation mechanism and C1S interaction
PMID: 11673533
7
Immunoglobulin-mediated C1R activation
PMID: 17996945
8
Uncertainty regarding C1R mechanism of C1S activation
PMID: 28104818
9
C1 complex assembly and C1R function
PMID: 29449492
10
C1R as plasma biomarker in sarcopenia
PMID: 39009419
11
C1R deficiency in Ehlers-Danlos syndrome
PMID: 19477526
Disease Associationsβ“˜1
Ehlers-Danlos syndrome, periodontal type, 1UniProt
Pathogenic Variants19
NM_001733.7(C1R):c.1012T>C (p.Cys338Arg)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜…β˜†β˜†2023β†’ Residue 338
NM_001733.7(C1R):c.1113C>G (p.Cys371Trp)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜…β˜†β˜†2022β†’ Residue 371
NM_001733.7(C1R):c.1111T>C (p.Cys371Arg)Likely pathogenic
Ehlers-Danlos syndrome, periodontal type 1
β˜…β˜†β˜†β˜†2025β†’ Residue 371
NM_001733.7(C1R):c.925T>C (p.Cys309Arg)Likely pathogenic
Ehlers-Danlos syndrome, periodontal type 1
β˜…β˜†β˜†β˜†2024β†’ Residue 309
NM_001733.7(C1R):c.1073G>A (p.Cys358Tyr)Likely pathogenic
Ehlers-Danlos syndrome, periodontal type 1
β˜…β˜†β˜†β˜†2023β†’ Residue 358
NM_001733.7(C1R):c.926G>A (p.Cys309Tyr)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2017β†’ Residue 309
NM_001733.7(C1R):c.149_150delinsAT (p.Val50Asp)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 50
NM_001733.7(C1R):c.1200_1215delinsTCATGTAATA (p.Arg401_Tyr405delinsHisValIle)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 401
NM_001733.7(C1R):c.1092G>C (p.Trp364Cys)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 364
NM_001733.7(C1R):c.917_927delinsGGACA (p.Ile306_Cys309delinsArgThr)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 306
NM_001733.7(C1R):c.1073G>T (p.Cys358Phe)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 358
NM_001733.7(C1R):c.902G>C (p.Arg301Pro)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 301
NM_001733.7(C1R):c.927C>G (p.Cys309Trp)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 309
NM_001733.7(C1R):c.899T>C (p.Leu300Pro)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 300
NM_001733.7(C1R):c.869A>G (p.Asp290Gly)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 290
NM_001733.7(C1R):c.905A>G (p.Tyr302Cys)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 302
NM_001733.7(C1R):c.1303T>C (p.Trp435Arg)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1|Ehlers-Danlos syndrome, periodontal type 2
β˜…β˜†β˜†β˜†2016β†’ Residue 435
NM_001733.7(C1R):c.1427_1428dup (p.Trp477fs)Pathogenic
Ehlers-Danlos syndrome, periodontal type 1
β˜…β˜†β˜†β˜†β†’ Residue 477
NM_001733.7(C1R):c.265T>C (p.Cys89Arg)Likely pathogenic
Ehlers-Danlos syndrome
β˜†β˜†β˜†β˜†2020β†’ Residue 89
View on ClinVar β†—
Related Genes
CFPProtein interaction100%CFHProtein interaction100%IGHProtein interaction100%C4AProtein interaction100%C4BProtein interaction100%CRPProtein interaction99%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
C1RCFPCFHIGHC4AC4BCRP
PROTEIN STRUCTURE
Preparing viewer…
PDB6F1D Β· 1.95 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.64LoF Tolerant
pLIβ“˜
0.86Intermediate
Observed/Expected LoF0.20 [0.08–0.64]
RankingsWhere C1R stands among ~20K protein-coding genes
  • #5,402of 20,598
    Most Researched88
  • #2,236of 5,498
    Most Pathogenic Variants19
  • #4,512of 17,882
    Most Constrained (LOEUF)0.64
Genes detectedC1R
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Proteomic profiling of human plasma extracellular vesicles identifies PF4 and C1R as novel biomarker in sarcopenia.
PMID: 39009419
J Cachexia Sarcopenia Muscle Β· 2024
1.00
2
Structure, function and molecular genetics of human and murine C1r.
PMID: 12396000
Immunobiology Β· 2002
0.90
3
Human complement C1r and C1s proteins and genes: studies with molecular probes.
PMID: 2572213
Behring Inst Mitt Β· 1989
0.80
4
The structures of human C1r and C1s and their relationship to other serine proteases.
PMID: 2552983
Behring Inst Mitt Β· 1989
0.70
5
Early complement proteases: C1r, C1s and MASPs. A structural insight into activation and functions.
PMID: 19477526
Mol Immunol Β· 2009
0.60