HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CACNA1F
calcium voltage-gated channel subunit alpha1 F
Chromosome X Β· Xp11.23
NCBI Gene: 778Ensembl: ENSG00000102001.13HGNC: HGNC:1393UniProt: O60840
79PubMed Papers
23Diseases
41Drugs
191Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneIon ChannelTransporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
membranedetection of light stimulus involved in visual perceptionvoltage-gated calcium channel complexvisual perceptioncongenital stationary night blindness 2AAland island eye diseaseCone rod dystrophyΓ…land Islands eye disease
✦AI Summary

CACNA1F encodes a voltage-dependent L-type calcium channel that activates at more hyperpolarized voltages and exhibits calcium-dependent inactivation. The channel mediates calcium ion import across the plasma membrane and is critical for retinal function, particularly in visual signal transduction 1. Mechanistically, CACNA1F variants disrupt normal calcium channel kinetics through multiple mechanisms. Loss-of-function mutations cause splicing defects and frameshifts leading to truncated proteins 2, while both gain- and loss-of-function variants can alter channel activation and inactivation kinetics 3. The location of mutations within the protein influences clinical severity, with N-terminal mutations producing more severe phenotypes 4. CACNA1F mutations cause X-linked retinal dystrophies, most notably incomplete congenital stationary night blindness (CSNB2) and Γ…land island eye disease (AIED) 14. CACNA1F variants account for approximately 3% of inherited retinal dystrophy cases 5. Additionally, CACNA1F mutations contribute to intellectual disability and global developmental delay in rare cases, with loss-of-function variants typically producing less severe phenotypes than gain-of-function variants 3. Genetic testing is essential for confirming CACNA1F-related diagnoses and enabling future gene-based therapeutic strategies, particularly as gene replacement approaches show promise for loss-of-function variants 15.

Sources cited
1
CACNA1F function in retinal physiology and causes incomplete CSNB; discusses X-linked inheritance and disease mechanisms in retinal disease
PMID: 32860923
2
Two novel CACNA1F mutations cause AIED and CSNB2 with different phenotypes; demonstrates that mutation location within the gene correlates with clinical severity
PMID: 35697328
3
Novel splice-altering CACNA1F variant causes cone dystrophy through exon skipping and frameshift mutations
PMID: 39858572
4
CACNA1F variants associated with intellectual disability and global developmental delay; documents both gain- and loss-of-function effects with varying severity
PMID: 33985586
5
CACNA1F accounts for 3% of inherited retinal dystrophy cases in a Swedish cohort; highlights importance of genetic testing for diagnosis and therapeutic eligibility
PMID: 37510321
Disease Associationsβ“˜23
congenital stationary night blindness 2AOpen Targets
0.81Strong
Aland island eye diseaseOpen Targets
0.74Strong
Cone rod dystrophyOpen Targets
0.70Moderate
Γ…land Islands eye diseaseOpen Targets
0.68Moderate
X-linked cone-rod dystrophy 3Open Targets
0.67Moderate
congenital stationary night blindnessOpen Targets
0.64Moderate
hypertensionOpen Targets
0.61Moderate
epilepsyOpen Targets
0.61Moderate
cone-rod dystrophyOpen Targets
0.61Moderate
coronary artery diseaseOpen Targets
0.60Moderate
Prinzmetal's anginaOpen Targets
0.60Moderate
fibromyalgiaOpen Targets
0.60Moderate
neuropathic painOpen Targets
0.60Moderate
SeizureOpen Targets
0.60Moderate
angina pectorisOpen Targets
0.60Moderate
cardiovascular diseaseOpen Targets
0.59Moderate
myocardial infarctionOpen Targets
0.59Moderate
restless legs syndromeOpen Targets
0.58Moderate
neuralgiaOpen Targets
0.58Moderate
hyperlipidemiaOpen Targets
0.57Moderate
Aaland island eye diseaseUniProt
Cone-rod dystrophy, X-linked 3UniProt
Night blindness, congenital stationary, 2AUniProt
Pathogenic Variants191
NM_001256789.3(CACNA1F):c.1840C>T (p.Arg614Ter)Pathogenic
not provided|Aland island eye disease|Congenital stationary night blindness 2A|X-linked cone-rod dystrophy 3
β˜…β˜…β˜†β˜†2026β†’ Residue 614
NM_001256789.3(CACNA1F):c.3133dup (p.Leu1045fs)Pathogenic
Congenital stationary night blindness 2A|not provided|CACNA1F-related disorder|Retinal dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 1045
NM_001256789.3(CACNA1F):c.1504C>T (p.Arg502Ter)Pathogenic
not provided|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 502
NM_001256789.3(CACNA1F):c.946TTC[2] (p.Phe318del)Pathogenic
Congenital stationary night blindness|not provided|Cone-rod dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 318
NM_001256789.3(CACNA1F):c.5004_5005del (p.Leu1670fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1670
NM_001256789.3(CACNA1F):c.1438del (p.Ala480fs)Pathogenic
not provided|Aland island eye disease;Congenital stationary night blindness 2A;X-linked cone-rod dystrophy 3
β˜…β˜…β˜†β˜†2025β†’ Residue 480
NM_001256789.3(CACNA1F):c.244C>T (p.Arg82Ter)Pathogenic
not provided|Aland island eye disease|Retinal dystrophy|Cone-rod dystrophy|Retinal disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 82
NM_005183.4(CACNA1F):c.2932C>T (p.Arg978Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 978
NM_001256789.3(CACNA1F):c.2543+1G>APathogenic
not provided|Aland island eye disease;X-linked cone-rod dystrophy 3;Congenital stationary night blindness 2A|CACNA1F-related disorder|X-linked CACNA1F-related disorders
β˜…β˜…β˜†β˜†2025
NM_001256789.3(CACNA1F):c.4008+1G>APathogenic
Retinal dystrophy|X-linked CACNA1F-related disorders
β˜…β˜…β˜†β˜†2025
NM_001256789.3(CACNA1F):c.1624C>T (p.Gln542Ter)Pathogenic
not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 542
NM_001256789.3(CACNA1F):c.2872C>T (p.Arg958Ter)Pathogenic
Congenital stationary night blindness 2A|Congenital stationary night blindness|Retinal dystrophy|not provided|CACNA1F-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 958
NM_001256789.3(CACNA1F):c.2881C>T (p.Arg961Ter)Pathogenic
Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 961
NM_001256789.3(CACNA1F):c.4051C>T (p.Arg1351Ter)Pathogenic
Congenital stationary night blindness|not provided|X-linked cone-rod dystrophy 3|Optic atrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 1351
NM_001256789.3(CACNA1F):c.2086-2A>GPathogenic
not provided|Congenital stationary night blindness|X-linked cone-rod dystrophy 3
β˜…β˜…β˜†β˜†2025
NM_001256789.3(CACNA1F):c.3792+2T>CPathogenic
not provided|X-linked cone-rod dystrophy 3
β˜…β˜…β˜†β˜†2025
NM_001256789.3(CACNA1F):c.3400G>T (p.Glu1134Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1134
NM_001256789.3(CACNA1F):c.2038C>T (p.Arg680Ter)Pathogenic
not provided|See cases
β˜…β˜…β˜†β˜†2025β†’ Residue 680
NM_001256789.3(CACNA1F):c.5446C>T (p.Arg1816Ter)Pathogenic
Congenital stationary night blindness 2A|not provided|Thyroid cancer, nonmedullary, 1
β˜…β˜…β˜†β˜†2025β†’ Residue 1816
NM_001256789.3(CACNA1F):c.3236+1G>APathogenic
not provided|Aland island eye disease|Colon adenocarcinoma|Clear cell carcinoma of kidney
β˜…β˜…β˜†β˜†2025
View on ClinVar β†—
Drug Targets41
AMLODIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
AMLODIPINE BENZOATEApproved
Voltage-gated L-type calcium channel blocker
hypertension
AMLODIPINE BESYLATEApproved
Voltage-gated L-type calcium channel blocker
Prinzmetal's angina
ATAGABALINPhase II
Voltage-gated calcium channel modulator
insomnia
AZD1305Phase II
HERG blocker
atrial flutter
AZELNIDIPINEApproved
Voltage-gated L-type calcium channel blocker
hypertension
BARNIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
BENIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
BEPRIDILApproved
Voltage-gated calcium channel blocker
cardiovascular disease
CILNIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
CINNARIZINEApproved
Histamine H1 receptor antagonist
CLEVIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
DILTIAZEMApproved
Voltage-gated L-type calcium channel blocker
hemorrhoid
DILTIAZEM HYDROCHLORIDEApproved
Voltage-gated L-type calcium channel blocker
angina pectoris
DRONEDARONEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
DRONEDARONE HYDROCHLORIDEApproved
Sodium channel alpha subunit blocker
atrial fibrillation
ELPETRIGINEPhase I
Sodium channel protein type II alpha subunit blocker
bipolar disorder
FELODIPINEApproved
Mineralocorticoid receptor antagonist
hypertension
GABAPENTINApproved
Voltage-gated calcium channel modulator
epilepsy
GABAPENTIN ENACARBILApproved
Voltage-gated calcium channel modulator
restless legs syndrome
IMAGABALINPhase III
Voltage-gated calcium channel modulator
generalized anxiety disorder
ISRADIPINEApproved
Voltage-gated L-type calcium channel blocker
hypertension
LACIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
LERCANIDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
LEVAMLODIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
LEVAMLODIPINE MALEATEApproved
Voltage-gated L-type calcium channel blocker
hypertension
MANIDIPINE 6300Approved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
NICARDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
NICARDIPINE HYDROCHLORIDEApproved
Voltage-gated L-type calcium channel blocker
hypertension
NIFEDIPINEApproved
Voltage-gated L-type calcium channel blocker
hypertension
NILVADIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
NIMODIPINEApproved
Mineralocorticoid receptor antagonist
NISOLDIPINEApproved
Voltage-gated L-type calcium channel blocker
hypertension
NITRENDIPINEApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
PHLOROGLUCINOLApproved
Voltage-gated calcium channel blocker
gastrointestinal disease
PREGABALINApproved
Voltage-gated calcium channel modulator
neuropathic pain
SULOCTIDILApproved
Voltage-gated calcium channel blocker
cardiovascular disease
TERODILINEApproved
Muscarinic acetylcholine receptor antagonist
Urinary incontinence
TERODILINE HYDROCHLORIDEUNKNOWN
Muscarinic acetylcholine receptor antagonist
VERAPAMILApproved
Voltage-gated L-type calcium channel blocker
cardiovascular disease
VERAPAMIL HYDROCHLORIDEApproved
Voltage-gated L-type calcium channel blocker
hypertension
Related Genes
CALM3Protein interaction100%GRM6Protein interaction99%CACNA2D2Protein interaction98%CALM1Protein interaction98%CACNA2D1Protein interaction98%HTR2CProtein interaction98%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
30%
Brain
29%
Heart
5%
Liver
4%
Ovary
3%
Gene Interaction Network
Click a node to explore
CACNA1FCALM3GRM6CACNA2D2CALM1CACNA2D1HTR2C
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O60840
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.51Moderately Constrained
pLIβ“˜
0.22Tolerant
Observed/Expected LoF0.41 [0.33–0.51]
RankingsWhere CACNA1F stands among ~20K protein-coding genes
  • #5,981of 20,598
    Most Researched79
  • #52of 1,025
    FDA-Approved Drug Targets36 Β· top 10%
  • #365of 5,498
    Most Pathogenic Variants191 Β· top 10%
  • #3,102of 17,882
    Most Constrained (LOEUF)0.51 Β· top quartile
Genes detectedCACNA1F
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Calcium channelopathies and intellectual disability: a systematic review.
PMID: 33985586
Orphanet J Rare Dis Β· 2021
1.00
2
Human Genetics of Ventricular Septal Defect.
PMID: 38884729
Adv Exp Med Biol Β· 2024
0.90
3
The X-linked retinopathies: Physiological insights, pathogenic mechanisms, phenotypic features and novel therapies.
PMID: 32860923
Prog Retin Eye Res Β· 2021
0.80
4
Novel Splice-Altering Variants in the
PMID: 39858572
Genes (Basel) Β· 2024
0.70
5
A Description of the Yield of Genetic Reinvestigation in Patients with Inherited Retinal Dystrophies and Previous Inconclusive Genetic Testing.
PMID: 37510321
Genes (Basel) Β· 2023
0.60