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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CAPN1
calpain 1
Chromosome 11 Β· 11q13.1
NCBI Gene: 823Ensembl: ENSG00000014216.17HGNC: HGNC:1476UniProt: B2RDI5
294PubMed Papers
21Diseases
0Drugs
50Pathogenic Variants
FUNCTIONAL ROLE
Protease
RESEARCH IMPACT
Trending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingfocal adhesioncytosolplasma membraneAutosomal recessive spastic paraplegia type 76Alzheimer diseaseneurodegenerative diseasehereditary spastic paraplegia 11
✦AI Summary

CAPN1 encodes calpain-1, a calcium-dependent cysteine protease that catalyzes limited proteolysis of substrates involved in cytoskeletal remodeling and signal transduction 1. The protein functions as a non-lysosomal thiol-protease that cleaves specific targets including CTBP1 and activates caspase-7 1. CAPN1 plays crucial roles in cellular processes through protein degradation, particularly by degrading PTPN1, which leads to phosphorylation and activation of c-Met and PIK3R2 signaling pathways 2. The protein is involved in autophagy regulation and inflammatory responses, with increased expression observed in various pathological conditions 3. Loss-of-function mutations in CAPN1 cause spastic paraplegia type 76 (SPG76), an autosomal recessive hereditary spastic paraplegia characterized by lower limb spasticity, ataxia, and sometimes bulbar involvement 14. Mutant CAPN1 proteins show abnormal intracellular aggregation and reduced colocalization with tubulin compared to wild-type protein 1. Additionally, CAPN1 has been implicated in cancer progression, promoting malignant behavior and drug resistance in lung adenocarcinoma 2, and serves as a host factor targeted by coronavirus inhibitors 5. The protein's dysregulation is associated with pulmonary arterial hypertension through HIF-1Ξ± signaling 6.

Sources cited
1
CAPN1 encodes calpain-1, a calcium-dependent cysteine protease that catalyzes limited proteolysis of substrates involved in cytoskeletal remodeling and signal transduction .
PMID: 37468791
2
CAPN1 plays crucial roles in cellular processes through protein degradation, particularly by degrading PTPN1, which leads to phosphorylation and activation of c-Met and PIK3R2 signaling pathways .
PMID: 32395869
3
The protein is involved in autophagy regulation and inflammatory responses, with increased expression observed in various pathological conditions .
PMID: 28575702
4
Loss-of-function mutations in CAPN1 cause spastic paraplegia type 76 (SPG76), an autosomal recessive hereditary spastic paraplegia characterized by lower limb spasticity, ataxia, and sometimes bulbar involvement .
PMID: 31023339
5
Additionally, CAPN1 has been implicated in cancer progression, promoting malignant behavior and drug resistance in lung adenocarcinoma , and serves as a host factor targeted by coronavirus inhibitors .
PMID: 38443334
6
The protein's dysregulation is associated with pulmonary arterial hypertension through HIF-1Ξ± signaling .
PMID: 38878112
Disease Associationsβ“˜21
Autosomal recessive spastic paraplegia type 76Open Targets
0.78Strong
Alzheimer diseaseOpen Targets
0.38Weak
neurodegenerative diseaseOpen Targets
0.33Weak
hereditary spastic paraplegia 11Open Targets
0.27Weak
genetic disorderOpen Targets
0.19Weak
neoplasmOpen Targets
0.08Suggestive
lung adenocarcinomaOpen Targets
0.08Suggestive
melanomaOpen Targets
0.08Suggestive
autosomal dominant macrothrombocytopeniaOpen Targets
0.07Suggestive
Von Willebrand diseaseOpen Targets
0.07Suggestive
CholecystitisOpen Targets
0.07Suggestive
thrombocytopenia 7Open Targets
0.07Suggestive
Glanzmann thrombasthenia 1Open Targets
0.06Suggestive
Rare hemorrhagic disorder due to a constitutional platelet anomalyOpen Targets
0.06Suggestive
thrombocytopenia 9Open Targets
0.06Suggestive
essential thrombocythemiaOpen Targets
0.06Suggestive
thrombocythemia 1Open Targets
0.06Suggestive
bleeding disorder, platelet-type, 24Open Targets
0.06Suggestive
platelet-type von Willebrand diseaseOpen Targets
0.06Suggestive
platelet-type bleeding disorder 15Open Targets
0.05Suggestive
Spastic paraplegia 76, autosomal recessiveUniProt
Pathogenic Variants50
NM_005186.4(CAPN1):c.338-1G>APathogenic
Autosomal recessive spastic paraplegia type 76|not provided
β˜…β˜…β˜†β˜†2025
NM_005186.4(CAPN1):c.618_619del (p.Gly208fs)Pathogenic
Autosomal recessive spastic paraplegia type 76|not provided|CAPN1-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 208
NM_005186.4(CAPN1):c.267+2T>CPathogenic
not provided|Autosomal recessive spastic paraplegia type 76|Gastric cancer
β˜…β˜…β˜†β˜†2025
NM_005186.4(CAPN1):c.1605+5G>APathogenic
Autosomal recessive spastic paraplegia type 76|not provided
β˜…β˜…β˜†β˜†2025
NM_005186.4(CAPN1):c.1534C>T (p.Arg512Cys)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 512
NM_005186.4(CAPN1):c.188dup (p.Val64fs)Pathogenic
not provided|Autosomal recessive spastic paraplegia type 76
β˜…β˜…β˜†β˜†2024β†’ Residue 64
NM_005186.4(CAPN1):c.929+2T>ALikely pathogenic
Autosomal recessive spastic paraplegia type 76
β˜…β˜…β˜†β˜†2024
NM_005186.4(CAPN1):c.853C>T (p.Arg285Ter)Pathogenic
not provided|Autosomal recessive spastic paraplegia type 76|Hereditary spastic paraplegia 11
β˜…β˜…β˜†β˜†2024β†’ Residue 285
NM_005186.4(CAPN1):c.759+1G>APathogenic
not provided
β˜…β˜…β˜†β˜†2024
NM_005186.4(CAPN1):c.1176G>A (p.Trp392Ter)Pathogenic
Autosomal recessive spastic paraplegia type 76|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 392
NM_005186.4(CAPN1):c.1129_1133del (p.Arg377fs)Pathogenic
not provided|Autosomal recessive spastic paraplegia type 76
β˜…β˜…β˜†β˜†2018β†’ Residue 377
NM_005186.4(CAPN1):c.843+1G>CPathogenic
not provided|Autosomal recessive spastic paraplegia type 76
β˜…β˜…β˜†β˜†2018
NM_005186.4(CAPN1):c.1005G>A (p.Trp335Ter)Pathogenic
not provided|Autosomal recessive spastic paraplegia type 76
β˜…β˜…β˜†β˜†2018β†’ Residue 335
NM_005186.4(CAPN1):c.1153C>T (p.Arg385Ter)Pathogenic
not provided|Autosomal recessive spastic paraplegia type 76
β˜…β˜…β˜†β˜†2017β†’ Residue 385
NM_005186.4(CAPN1):c.1969G>T (p.Glu657Ter)Pathogenic
not provided|Autosomal recessive spastic paraplegia type 76
β˜…β˜…β˜†β˜†2017β†’ Residue 657
NM_005186.4(CAPN1):c.1161C>G (p.Tyr387Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2026β†’ Residue 387
NM_005186.4(CAPN1):c.268-2A>GPathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_005186.4(CAPN1):c.2017_2023del (p.Asp673fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 673
NM_005186.4(CAPN1):c.457-2A>GLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_005186.4(CAPN1):c.268-1G>TPathogenic
Autosomal recessive spastic paraplegia type 76
β˜…β˜†β˜†β˜†2024
View on ClinVar β†—
Related Genes
CASTProtein interaction100%TLN1Protein interaction97%CDK5Protein interaction97%BAK1Protein interaction94%BAXProtein interaction94%BIDProtein interaction94%
Tissue Expression6 tissues
Lung
100%
Liver
67%
Heart
58%
Bone Marrow
58%
Ovary
58%
Brain
36%
Gene Interaction Network
Click a node to explore
CAPN1CASTTLN1CDK5BAK1BAXBID
PROTEIN STRUCTURE
Preparing viewer…
PDB7W7O Β· 1.59 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.98LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.80 [0.67–0.98]
RankingsWhere CAPN1 stands among ~20K protein-coding genes
  • #1,201of 20,598
    Most Researched294 Β· top 10%
  • #1,324of 5,498
    Most Pathogenic Variants50 Β· top quartile
  • #9,300of 17,882
    Most Constrained (LOEUF)0.98
Genes detectedCAPN1
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Spastic paraplegia type 76 due to novel CAPN1 mutations: three case reports with literature review.
PMID: 37468791
Neurogenetics Β· 2023
1.00
2
Two novel homozygous mutations of CAPN1 in Chinese patients with hereditary spastic paraplegia and literatures review.
PMID: 31023339
Orphanet J Rare Dis Β· 2019
0.90
3
Loss-of-function variants in the CAPN1 activator CD99L2 cause X-linked spastic ataxia.
PMID: 41690933
Nat Commun Β· 2026
0.80
4
Mitochondrial calpain-1 truncates ATP synthase beta subunit.
PMID: 40262470
Biochem Biophys Res Commun Β· 2025
0.80
5
Different expression patterns of calpain isozymes 1 and 2 (CAPN1 and 2) in squamous cell carcinomas (SCC) and basal cell carcinomas (BCC) of human skin.
PMID: 12635142
J Pathol Β· 2003
0.76