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5 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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CAPNS2
calpain small subunit 2
Chromosome 16 · 16q12.2
NCBI Gene: 84290Ensembl: ENSG00000256812.2HGNC: HGNC:16371UniProt: Q96L46
16PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
calcium-dependent cysteine-type endopeptidase activityprotein bindingcalpain complexcytosolAlzheimer diseasealopecia areatairritable bowel syndromenon-small cell lung carcinoma
✦AI Summary

CAPNS2 encodes a novel small regulatory subunit of calpains, calcium-dependent cysteine proteases involved in limited proteolysis of cytoskeletal and signaling proteins 1. As a tissue-specific rather than ubiquitous protein, CAPNS2 functions analogously to the conventional small subunit by facilitating proper folding of the large catalytic subunit into its active conformation, though it binds more weakly and lacks autolytic conversion typical of classical small subunits 1. CAPNS2 is implicated in extracellular matrix organization, with expression most significantly upregulated in studies of collagen biosynthesis regulation 2. Genetically, rare coding variants in CAPNS2 were identified as novel associations with neuroticism in large-scale exome sequencing of 394,005 individuals, contributing to the estimated 7.3% heritability of rare coding variants in this neuropsychiatric trait 3. Common variants near CAPNS2 (LPCAT2/CAPNS2 locus) show gender-specific associations with thyroid function markers FT4 and TSH, suggesting a role in hypothalamic-pituitary-thyroid axis regulation and potential involvement in thyroid dysfunction 4. These findings position CAPNS2 at the intersection of neuropsychiatric, endocrine, and fibrotic disease pathways, though functional mechanisms require further investigation.

Sources cited
1
CAPNS2 is a novel tissue-specific small subunit of calpains that facilitates large subunit folding with reduced binding affinity and lacks autolytic conversion
PMID: 11853546
2
CAPNS2 is the top upregulated gene involved in extracellular matrix organization in gingival fibroblasts when CDKN2B-AS1 is downregulated
PMID: 38833008
3
CAPNS2 rare coding variants are associated with neuroticism and contribute to heritability of neuropsychiatric traits
PMID: 39511343
4
LPCAT2/CAPNS2 locus shows gender-specific associations with thyroid function markers FT4 and TSH in thyroid regulation
PMID: 23408906
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
Alzheimer diseaseOpen Targets
0.37Weak
alopecia areataOpen Targets
0.14Weak
irritable bowel syndromeOpen Targets
0.07Suggestive
non-small cell lung carcinomaOpen Targets
0.04Suggestive
esophageal adenocarcinomaOpen Targets
0.04Suggestive
Barrett's esophagusOpen Targets
0.04Suggestive
liver diseaseOpen Targets
0.03Suggestive
prostate carcinomaOpen Targets
0.03Suggestive
HypernatremiaOpen Targets
0.02Suggestive
aortic atherosclerosisOpen Targets
0.02Suggestive
oral squamous cell carcinomaOpen Targets
0.01Suggestive
esophageal squamous cell carcinomaOpen Targets
0.01Suggestive
chronic interstitial cystitisOpen Targets
0.01Suggestive
periodontitisOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
SepsisOpen Targets
0.00Suggestive
prostate adenocarcinomaOpen Targets
0.00Suggestive
rheumatoid arthritisOpen Targets
0.00Suggestive
Schinzel-Giedion syndromeOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes

No related genes found for this gene.

Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network

No interaction data available for this gene.

PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q96L46
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.11LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.70 [0.46–1.11]
RankingsWhere CAPNS2 stands among ~20K protein-coding genes
  • #15,220of 20,598
    Most Researched16
  • #11,442of 17,882
    Most Constrained (LOEUF)1.11
Genes detectedCAPNS2
Sources retrieved5 papers
Response time—
📄 Sources
5
1
Large-scale exome sequencing identified 18 novel genes for neuroticism in 394,005 UK-based individuals.
PMID: 39511343
Nat Hum Behav · 2025
1.00
2
lncRNA CDKN2B-AS1 regulates collagen expression.
PMID: 38833008
Hum Genet · 2024
0.80
3
A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.
PMID: 23408906
PLoS Genet · 2013
0.60
4
A novel human small subunit of calpains.
PMID: 11853546
Biochem J · 2002
0.40
5
Calpain 9 as a therapeutic target in TGFβ-induced mesenchymal transition and fibrosis.
PMID: 31316008
Sci Transl Med · 2019
0.20