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GeneE
50 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CCNE1
cyclin E1
Chromosome 19 · 19q12
NCBI Gene: 898Ensembl: ENSG00000105173.14HGNC: HGNC:1589UniProt: A0A0G3DHS8
522PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Highly StudiedTrending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein phosphorylationprotein bindingG1/S transition of mitotic cell cyclepositive regulation of mesenchymal stem cell proliferationAbnormality of the skeletal systemneurodegenerative diseaseurinary bladder cancerurinary bladder carcinoma
✦AI Summary

CCNE1 encodes cyclin E1, a critical regulator of the G1/S cell cycle transition that functions as a regulatory subunit of cyclin-dependent kinase 2 (CDK2) 1. In normal cells, CCNE1 controls entry into S phase through protein phosphorylation and positive regulation of G1/S transition 1. However, CCNE1 amplification is prevalent in multiple cancer types, particularly high-grade serous ovarian cancer (20%), endometrial cancer (45.4%), and gastro-oesophageal cancers, where elevated cyclin E1 levels associate with genome instability, whole-genome doubling, and chemotherapy resistance 2 3. Mechanistically, elevated CCNE1 expression induces replicative stress that activates ATR-Chk1-dependent checkpoints; p53 subsequently promotes mitotic bypass and endoreduplication, facilitating whole-genome duplication in cancer evolution 4. CCNE1 amplification confers resistance to CDK4/6 inhibitors like palbociclib, with high CCNE1 expression reducing progression-free survival benefit 5. Therapeutically, CCNE1-amplified tumors show synthetic lethality with PKMYT1 kinase inhibition (RP-6306), and combined targeting of PKMYT1 and ATR achieves durable tumor regression 2 6. CCNE1 status assessment via fluorescence in situ hybridization and immunohistochemistry predicts response to CDK and Wee1 inhibitors, with objective response rates of 32-40% 7. CDK2-selective degraders co-depleting cyclin E1 show promise in CCNE1-amplified cancers 8.

Sources cited
1
CCNE1 amplification is prevalent in ovarian, uterine, and gastro-oesophageal cancers; associated with genome instability and therapy resistance; PKMYT1 inhibition is synthetically lethal with CCNE1 amplification
PMID: 35444283
2
CCNE1 amplification is common in primary resistant and refractory high-grade serous ovarian cancer
PMID: 26017449
3
Elevated cyclin E1 expression causes replicative stress; p53 promotes mitotic bypass and endoreduplication in whole-genome duplication
PMID: 36681079
4
Combined PKMYT1 and ATR inhibition synergistically targets CCNE1-amplified ovarian and endometrial cancers with durable antitumor activity
PMID: 40169546
5
High CCNE1 mRNA expression is associated with reduced palbociclib efficacy in hormone receptor-positive metastatic breast cancer
PMID: 30807234
6
CCNE1 forms functional complexes with CDK2 at the G1/S transition
PMID: 39294320
7
CCNE1 amplification occurs in 20% of ovarian and 45.4% of endometrial carcinomas; FISH and IHC are validated detection methods; CCNE1 status predicts response to Wee1 and CDK2 inhibitors with 32-40% objective response rates
PMID: 41077408
8
CDK2 degraders that co-deplete cyclin E1 show efficacy in CCNE1-amplified cancers with improved selectivity over small-molecule inhibitors
PMID: 40250405
Disease Associationsⓘ20
Abnormality of the skeletal systemOpen Targets
0.50Moderate
neurodegenerative diseaseOpen Targets
0.50Moderate
urinary bladder cancerOpen Targets
0.49Moderate
urinary bladder carcinomaOpen Targets
0.48Moderate
obesityOpen Targets
0.43Moderate
gastric carcinomaOpen Targets
0.41Moderate
breast carcinomaOpen Targets
0.39Weak
colorectal cancerOpen Targets
0.39Weak
esophageal adenocarcinomaOpen Targets
0.38Weak
colorectal adenocarcinomaOpen Targets
0.38Weak
skin basal cell carcinomaOpen Targets
0.37Weak
Endometrial Endometrioid AdenocarcinomaOpen Targets
0.37Weak
hypertensionOpen Targets
0.36Weak
breast cancerOpen Targets
0.35Weak
ovarian cancerOpen Targets
0.34Weak
benign prostatic hyperplasiaOpen Targets
0.32Weak
overnutritionOpen Targets
0.32Weak
occlusion precerebral arteryOpen Targets
0.31Weak
hepatocellular carcinomaOpen Targets
0.31Weak
bladder tumorOpen Targets
0.31Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CDK2Protein interaction100%CCNA2Protein interaction100%CDT1Protein interaction100%SKP1Protein interaction100%CUL3Protein interaction100%CUL1Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
21%
Heart
6%
Lung
3%
Ovary
2%
Liver
1%
Gene Interaction Network
Click a node to explore
CCNE1CDK2CCNA2CDT1SKP1CUL3CUL1
PROTEIN STRUCTURE
Preparing viewer…
PDB8VQ3 · 1.84 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.37Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.22 [0.13–0.37]
RankingsWhere CCNE1 stands among ~20K protein-coding genes
  • #497of 20,598
    Most Researched522 · top 5%
  • #1,668of 17,882
    Most Constrained (LOEUF)0.37 · top 10%
Genes detectedCCNE1
Sources retrieved50 papers
Response time—
📄 Sources
50▼
1
CCNE1 amplification is synthetic lethal with PKMYT1 kinase inhibition.
PMID: 35444283
Nature · 2022
1.00
2
Whole-genome characterization of chemoresistant ovarian cancer.
PMID: 26017449
Nature · 2015
0.90
3
Discrete vulnerability to pharmacological CDK2 inhibition is governed by heterogeneity of the cancer cell cycle.
PMID: 39924553
Nat Commun · 2025
0.82
4
Cyclin E1 overexpression sensitizes ovarian cancer cells to WEE1 and PLK1 inhibition.
PMID: 39994376
Oncogene · 2025
0.80
5
Cyclin E-induced replicative stress drives p53-dependent whole-genome duplication.
PMID: 36681079
Cell · 2023
0.80