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27 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CD1D
CD1d molecule
Chromosome 1 · 1q23.1
NCBI Gene: 912Ensembl: ENSG00000158473.8HGNC: HGNC:1637UniProt: A0A669KAZ2
191PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindinglipid antigen bindingexogenous lipid antigen bindingcell adhesion molecule bindinginherited hemoglobinopathyPhenotypic abnormalityneoplasminfection
✦AI Summary

CD1d is a non-polymorphic MHC class I-like glycoprotein that presents lipid and glycolipid antigens to invariant natural killer T (iNKT) cells 1. CD1d binds both self-lipids and microbial glycolipids through a conformational binding groove, with the sphingosine chain anchored in the C' pocket and acyl chains in the A' pocket 2. Upon antigen binding, CD1d undergoes conformational changes that facilitate iNKT TCR recognition 3. iNKT cells recognize CD1d-presented antigens through semi-invariant αβ TCRs and initiate rapid innate-like immune responses, including IL-4, IL-13, and IFN-γ production, bridging innate and adaptive immunity 45. This CD1d-iNKT axis regulates diverse immunological processes including antimicrobial responses against bacteria and parasites, as well as tumor immunity 15. CD1d expression on B cells and other antigen-presenting cells enables cognate interactions with iNKT cells 1. Altered CD1d expression serves as an immune evasion mechanism in viral infections and malignancies 6. The CD1d-iNKT axis represents a therapeutic target, with synthetic lipid antigens showing promise as vaccine adjuvants and immunotherapeutic agents 45.

Sources cited
1
CD1d is a non-polymorphic MHC class I-like molecule presenting phospholipids and glycosphingolipids to iNKT cells; regulates innate and adaptive immunity
PMID: 25381357
2
Crystal structure of human CD1d showing lipid binding in grooves with sphingosine in C' pocket and acyl chains in A' pocket; dual conformational states
PMID: 16007090
3
CD1d undergoes conformational changes upon lysophospholipid binding; TCR recognition requires specific headgroup displacement
PMID: 22395072
4
iNKT cells differentiate via CD1d-TCR engagement; recognize self glycosphingolipids and microbial α-glycuronylceramides; produce Th1/Th2 cytokines
PMID: 17150027
5
CD1d-iNKT axis presents lipid antigens triggering rapid immune responses against pathogens; potential for therapeutic intervention in infectious diseases
PMID: 40243400
6
EBV-infected B cells downregulate CD1d in vivo as immune evasion; CD1d expression impacts iNKT cell-mediated anti-tumor immunity
PMID: 38736328
7
Mouse and human CD1d-self-lipid complexes are recognized differently by murine iNKT TCRs, showing species-specific reactivity patterns
PMID: 27213277
Disease Associationsⓘ20
inherited hemoglobinopathyOpen Targets
0.32Weak
Phenotypic abnormalityOpen Targets
0.23Weak
neoplasmOpen Targets
0.12Weak
infectionOpen Targets
0.10Suggestive
chronic lymphocytic leukemiaOpen Targets
0.10Suggestive
systemic lupus erythematosusOpen Targets
0.09Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.09Suggestive
acute myeloid leukemiaOpen Targets
0.09Suggestive
acute lymphoblastic leukemiaOpen Targets
0.08Suggestive
leukemiaOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
myeloid sarcomaOpen Targets
0.08Suggestive
isolated agammaglobulinemiaOpen Targets
0.08Suggestive
ulcerative colitisOpen Targets
0.08Suggestive
glioblastomaOpen Targets
0.08Suggestive
autoimmune diseaseOpen Targets
0.07Suggestive
Chronic mucocutaneous candidosisOpen Targets
0.07Suggestive
familial idiopathic steroid-resistant nephrotic syndromeOpen Targets
0.07Suggestive
Miyoshi myopathyOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CD8AProtein interaction100%CD5Protein interaction100%IFNGProtein interaction99%CD3EProtein interaction99%CD40LGProtein interaction98%PTPRCProtein interaction98%
Tissue Expression6 tissues
Liver
100%
Lung
36%
Bone Marrow
27%
Heart
13%
Ovary
4%
Brain
2%
Gene Interaction Network
Click a node to explore
CD1DCD8ACD5IFNGCD3ECD40LGPTPRC
PROTEIN STRUCTURE
Preparing viewer…
PDB8SOS · 2.33 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.19LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.92 [0.71–1.19]
RankingsWhere CD1D stands among ~20K protein-coding genes
  • #2,241of 20,598
    Most Researched191 · top quartile
  • #12,501of 17,882
    Most Constrained (LOEUF)1.19
Genes detectedCD1D
Sources retrieved27 papers
Response time—
📄 Sources
27▼
1
Lysophospholipid presentation by CD1d and recognition by a human Natural Killer T-cell receptor.
PMID: 22395072
EMBO J · 2012
1.00
2
The biology of NKT cells.
PMID: 17150027
Annu Rev Immunol · 2007
0.90
3
The crystal structure of human CD1d with and without alpha-galactosylceramide.
PMID: 16007090
Nat Immunol · 2005
0.80
4
Efficient preparation of human and mouse CD1d proteins using silkworm baculovirus expression system.
PMID: 32213313
Protein Expr Purif · 2020
0.70
5
Role of CD1d- and MR1-Restricted T Cells in Asthma.
PMID: 30210497
Front Immunol · 2018
0.68