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GeneE
27 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CHD7
chromodomain helicase DNA binding protein 7
Chromosome 8 Β· 8q12.2
NCBI Gene: 55636Ensembl: ENSG00000171316.15HGNC: HGNC:20626UniProt: Q6ZWF9
211PubMed Papers
23Diseases
0Drugs
843Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
regulation of growth hormone secretioncentral nervous system developmentcranial nerve developmentT cell differentiationCHARGE syndromehypogonadotropic hypogonadism 5 with or without anosmiaCHD7-related CHARGE syndromeKallmann syndrome
✦AI Summary

CHD7 encodes an ATP-dependent chr8 remodeling protein that slides nucleosomes along DNA and regulates gene transcription 1. The protein functions as a chr8 helicase that participates in chr8 remodeling and transcriptional regulation 2. CHD7 plays critical roles in early embryonic development, particularly in definitive endodermal and mesodermal development from embryonic stem cells 3. In inner ear development, CHD7 acts in a gene regulatory network with SOX2, binding at transcription start sites and enhancers to control expression of key developmental genes including Pax2 and Otx2 4. During cardiac development, CHD7 is required for atrioventricular cushion development, outflow tract septation, and great vessel formation, working in concert with transcription factors like TBX1 and SMADs to regulate genes such as p53 and NKX2.5 5. Loss-of-function mutations in CHD7 cause CHARGE syndrome, a complex multi-system disorder affecting over 75% of patients with this condition 6. The syndrome includes coloboma, heart defects, choanal atresia, growth retardation, genital hypoplasia, and ear anomalies 7. CHD7 mutations are also associated with idiopathic hypogonadotropic hypogonadism and Kallmann syndrome 2.

Sources cited
1
CHD7 is an ATP-dependent chromatin remodeling protein that slides nucleosomes along DNA
PMID: 28533432
2
CHD7 participates in chromatin remodeling and transcriptional regulation
PMID: 21856375
3
CHD7 plays critical roles in definitive endodermal and mesodermal development from embryonic stem cells
PMID: 40528267
4
CHD7 acts in a gene regulatory network with SOX2 in inner ear development, controlling expression of key genes like Pax2 and Otx2
PMID: 38408234
5
CHD7 is required for cardiac development and works with transcription factors like TBX1 and SMADs to regulate genes such as p53 and NKX2.5
PMID: 29088513
6
CHD7 mutations are detected in over 75% of patients with CHARGE syndrome
PMID: 16959034
7
CHARGE syndrome is caused by CHD7 mutations and affects multiple organ systems
PMID: 24548020
8
CHD7 mutations are associated with idiopathic hypogonadotropic hypogonadism and Kallmann syndrome
PMID: 21856375
Disease Associationsβ“˜23
CHARGE syndromeOpen Targets
0.87Strong
hypogonadotropic hypogonadism 5 with or without anosmiaOpen Targets
0.81Strong
CHD7-related CHARGE syndromeOpen Targets
0.71Strong
Kallmann syndromeOpen Targets
0.69Moderate
adolescent idiopathic scoliosisOpen Targets
0.60Moderate
genetic disorderOpen Targets
0.55Moderate
neurodegenerative diseaseOpen Targets
0.53Moderate
hypogonadotropic hypogonadismOpen Targets
0.47Moderate
ImmunodeficiencyOpen Targets
0.46Moderate
immune system diseaseOpen Targets
0.46Moderate
immunodeficiency diseaseOpen Targets
0.46Moderate
hypothyroidismOpen Targets
0.39Weak
Hearing impairmentOpen Targets
0.39Weak
prostate carcinomaOpen Targets
0.38Weak
hearing lossOpen Targets
0.37Weak
Omenn syndromeOpen Targets
0.37Weak
Joubert syndromeOpen Targets
0.34Weak
scoliosisOpen Targets
0.34Weak
myopiaOpen Targets
0.34Weak
coloboma of irisOpen Targets
0.34Weak
CHARGE syndromeUniProt
Hypogonadotropic hypogonadism 5 with or without anosmiaUniProt
Idiopathic scoliosis 3UniProt
Pathogenic Variants843
NM_017780.4(CHD7):c.1803_1806del (p.Lys602fs)Pathogenic
not provided|CHARGE syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 602
NM_017780.4(CHD7):c.5050+1G>APathogenic
not provided
β˜…β˜…β˜†β˜†2026
NM_017780.4(CHD7):c.2839C>T (p.Arg947Ter)Pathogenic
not provided|CHARGE syndrome;Hypogonadotropic hypogonadism 5 with or without anosmia|CHARGE syndrome|CHD7-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 947
NM_017780.4(CHD7):c.5405-17G>APathogenic
not provided|CHARGE syndrome|Inborn genetic diseases|CHARGE syndrome;Hypogonadotropic hypogonadism 5 with or without anosmia|Hypogonadotropic hypogonadism 5 with or without anosmia|CHD7-related CHARGE syndrome
β˜…β˜…β˜†β˜†2026
NM_017780.4(CHD7):c.4015C>T (p.Arg1339Ter)Pathogenic
not provided|CHARGE syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 1339
NM_017780.4(CHD7):c.3082A>G (p.Ile1028Val)Pathogenic
CHARGE syndrome|not provided|Hypogonadotropic hypogonadism 5 with or without anosmia;CHARGE syndrome|See cases
β˜…β˜…β˜†β˜†2026β†’ Residue 1028
NM_017780.4(CHD7):c.2504_2508del (p.Tyr835fs)Pathogenic
CHARGE syndrome|not provided|CHD7-related disorder|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026β†’ Residue 835
NM_017780.4(CHD7):c.3106C>T (p.Arg1036Ter)Pathogenic
not provided|CHARGE syndrome|CHD7-related CHARGE syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 1036
NM_017780.4(CHD7):c.3089A>G (p.Asn1030Ser)Pathogenic
not provided|CHARGE syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1030
NM_017780.4(CHD7):c.7824T>G (p.Tyr2608Ter)Pathogenic
CHARGE syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 2608
NM_017780.4(CHD7):c.862C>T (p.Gln288Ter)Pathogenic
CHARGE syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 288
NM_017780.4(CHD7):c.487C>T (p.Gln163Ter)Pathogenic
CHARGE syndrome|CHD7-related CHARGE syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 163
NM_017780.4(CHD7):c.8063_8064del (p.Ile2688fs)Pathogenic
not provided|CHD7-related CHARGE syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 2688
NM_017780.4(CHD7):c.7252C>T (p.Arg2418Ter)Pathogenic
CHARGE syndrome|not provided|not specified
β˜…β˜…β˜†β˜†2025β†’ Residue 2418
NM_017780.4(CHD7):c.6322G>A (p.Gly2108Arg)Pathogenic
CHARGE syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 2108
NM_017780.4(CHD7):c.5405-7G>APathogenic
not provided|CHARGE syndrome|Hypogonadotropic hypogonadism 5 with or without anosmia|Inborn genetic diseases|CHD7-related disorder
β˜…β˜…β˜†β˜†2025
NM_017780.4(CHD7):c.6369CTT[1] (p.Phe2124del)Pathogenic
CHARGE syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 2124
NM_017780.4(CHD7):c.664C>T (p.Gln222Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 222
NM_017780.4(CHD7):c.4186-2A>GPathogenic
CHARGE syndrome|Isolated anophthalmia-microphthalmia syndrome
β˜…β˜…β˜†β˜†2025
NM_017780.4(CHD7):c.2509_2512del (p.His837fs)Pathogenic
CHARGE syndrome;Hypogonadotropic hypogonadism 5 with or without anosmia|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 837
View on ClinVar β†—
Related Genes
PROK2Protein interaction100%SMARCA4Protein interaction99%RBBP5Protein interaction99%CHD8Protein interaction98%KISS1RProtein interaction98%GNRH1Protein interaction86%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
41%
Heart
22%
Lung
20%
Liver
13%
Ovary
5%
Gene Interaction Network
Click a node to explore
CHD7PROK2SMARCA4RBBP5CHD8KISS1RGNRH1
PROTEIN STRUCTURE
Preparing viewer…
PDB2CKC Β· NMR
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.11Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.08 [0.05–0.11]
RankingsWhere CHD7 stands among ~20K protein-coding genes
  • #1,974of 20,598
    Most Researched211 Β· top 10%
  • #51of 5,498
    Most Pathogenic Variants843 Β· top 1%
  • #84of 17,882
    Most Constrained (LOEUF)0.11 Β· top 1%
Genes detectedCHD7
Sources retrieved27 papers
Response timeβ€”
πŸ“„ Sources
27β–Ό
1
Epigenetics.
PMID: 38884720
Adv Exp Med Biol Β· 2024
1.00
2
CHARGE syndrome: a review.
PMID: 24548020
J Paediatr Child Health Β· 2014
0.90
3
The Genomic and Epigenomic Landscape of Double-Negative Metastatic Prostate Cancer.
PMID: 37289025
Cancer Res Β· 2023
0.80
4
Chromatin modification abnormalities by CHD7 and KMT2C loss promote medulloblastoma progression.
PMID: 40393452
Cell Rep Β· 2025
0.76
5
CHD7 regulates otic lineage specification and hair cell differentiation in human inner ear organoids.
PMID: 36396635
Nat Commun Β· 2022
0.72