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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CHD8
chromodomain helicase DNA binding protein 8
Chromosome 14 Β· 14q11.2
NCBI Gene: 57680Ensembl: ENSG00000100888.16HGNC: HGNC:20153UniProt: Q9HCK8
185PubMed Papers
21Diseases
0Drugs
212Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
negative regulation of canonical Wnt signaling pathwaynegative regulation of DNA-templated transcriptionpositive regulation of DNA-templated transcriptionpositive regulation of transcription by RNA polymerase IIautismautism spectrum disordergenetic disorderIntellectual disability
✦AI Summary

CHD8 is an ATP-dependent chr14-remodeling factor that regulates transcription through nucleosome repositioning and chr14 structure modification 1. It functions as a transcription repressor by recruiting histone H1 to target genes and suppresses p53-mediated apoptosis, while also negatively regulating Wnt signaling through beta-catenin regulation. CHD8 modulates alternative splicing in genes involved in neuronal differentiation, cell cycle, and DNA repair, and enables H3K36me3-coupled transcription elongation. CHD8 mutations are strongly associated with autism spectrum disorder (ASD), ranking among the most highly penetrant ASD risk genes 23. Loss-of-function variants in CHD8 cause severe cognitive impairment in autistic individuals (88% with cognitive impairment), with CHD8 showing male-biased de novo enrichment 32. Animal models reveal that CHD8 haploinsufficiency disrupts cortical neuronal development, particularly affecting GABAergic and deep-layer excitatory neurons asynchronously 4. Conversely, CHD8 duplication causes behavioral hyperactivity, microcephaly, and impaired neuronal differentiation through aberrant enhancer binding 5. CHD8 mutations are implicated in intellectual developmental disorder with autism and macrocephaly, making it a critical regulator of normal neurodevelopment.

Sources cited
1
CHD8 is an ATP-dependent chromatin-remodeling factor that slides nucleosomes along DNA
PMID: 28533432
2
CHD8 is a highly penetrant ASD risk gene with loss-of-function variants causing 88% cognitive impairment in autistic individuals
PMID: 35982159
3
CHD8 shows male-biased de novo mutation enrichment in neurodevelopmental disorders
PMID: 31785789
4
CHD8 haploinsufficiency causes asynchronous development of GABAergic and deep-layer excitatory projection neurons in cortical organoids
PMID: 35110736
5
CHD8 duplication leads to behavioral hyperactivity, microcephaly, impaired neuronal differentiation, and aberrant enhancer binding
PMID: 40419468
Disease Associationsβ“˜21
autismOpen Targets
0.78Strong
autism spectrum disorderOpen Targets
0.63Moderate
genetic disorderOpen Targets
0.55Moderate
Intellectual disabilityOpen Targets
0.51Moderate
Neurodevelopmental disorderOpen Targets
0.50Moderate
complex neurodevelopmental disorderOpen Targets
0.41Moderate
MacrocephalyOpen Targets
0.41Moderate
Neurodevelopmental delayOpen Targets
0.35Weak
developmental disorder of mental healthOpen Targets
0.30Weak
Fatigable weaknessOpen Targets
0.27Weak
Congenital ptosisOpen Targets
0.27Weak
Increased muscle fatiguabilityOpen Targets
0.27Weak
marfanoid habitus and intellectual disabilityOpen Targets
0.27Weak
OvergrowthOpen Targets
0.27Weak
Rare genetic intellectual disabilityOpen Targets
0.26Weak
Delayed speech and language developmentOpen Targets
0.12Weak
developmental disabilityOpen Targets
0.12Weak
genetic developmental and epileptic encephalopathyOpen Targets
0.12Weak
Motor delayOpen Targets
0.12Weak
Tall statureOpen Targets
0.12Weak
Intellectual developmental disorder with autism and macrocephalyUniProt
Pathogenic Variants212
NM_001170629.2(CHD8):c.4934dup (p.Tyr1645Ter)Pathogenic
Intellectual developmental disorder with autism and macrocephaly|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 1645
NM_001170629.2(CHD8):c.5389C>T (p.Arg1797Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1797
NM_001170629.2(CHD8):c.4009C>T (p.Arg1337Ter)Pathogenic
Intellectual developmental disorder with autism and macrocephaly|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1337
NM_001170629.2(CHD8):c.5326C>T (p.Arg1776Ter)Pathogenic
not provided|Intellectual developmental disorder with autism and macrocephaly
β˜…β˜…β˜†β˜†2025β†’ Residue 1776
NM_001170629.2(CHD8):c.6649C>T (p.Arg2217Ter)Pathogenic
not provided|Inborn genetic diseases|Intellectual developmental disorder with autism and macrocephaly
β˜…β˜…β˜†β˜†2025β†’ Residue 2217
NM_001170629.2(CHD8):c.3562C>T (p.Arg1188Ter)Pathogenic
not provided|Intellectual developmental disorder with autism and macrocephaly
β˜…β˜…β˜†β˜†2025β†’ Residue 1188
NM_001170629.2(CHD8):c.4744C>T (p.Arg1582Ter)Pathogenic
Intellectual developmental disorder with autism and macrocephaly|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 1582
NM_001170629.2(CHD8):c.6447_6450del (p.Arg2150fs)Pathogenic
Intellectual developmental disorder with autism and macrocephaly
β˜…β˜…β˜†β˜†2025β†’ Residue 2150
NM_001170629.2(CHD8):c.2626C>T (p.Arg876Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 876
NM_001170629.2(CHD8):c.4800del (p.Gly1602fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1602
NM_001170629.2(CHD8):c.2726C>G (p.Ser909Ter)Pathogenic
not provided|Intellectual developmental disorder with autism and macrocephaly
β˜…β˜…β˜†β˜†2025β†’ Residue 909
NM_001170629.2(CHD8):c.4204C>T (p.Arg1402Ter)Pathogenic
not provided|Intellectual developmental disorder with autism and macrocephaly|CHD8-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 1402
NM_001170629.2(CHD8):c.727C>T (p.Arg243Ter)Pathogenic
Autism|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 243
NM_001170629.2(CHD8):c.1690C>T (p.Arg564Ter)Pathogenic
not provided|CHD8-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 564
NM_001170629.2(CHD8):c.1744C>T (p.Arg582Ter)Pathogenic
Intellectual developmental disorder with autism and macrocephaly|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 582
NM_001170629.2(CHD8):c.3724C>T (p.Arg1242Ter)Pathogenic
Intellectual developmental disorder with autism and macrocephaly|not provided|Neurodevelopmental disorder
β˜…β˜…β˜†β˜†2024β†’ Residue 1242
NM_001170629.2(CHD8):c.4611del (p.Lys1537_Val1538insTer)Likely pathogenic
Intellectual developmental disorder with autism and macrocephaly
β˜…β˜…β˜†β˜†2024β†’ Residue 1537
NM_001170629.2(CHD8):c.3733C>T (p.Arg1245Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 1245
NM_001170629.2(CHD8):c.5017C>T (p.Arg1673Ter)Pathogenic
Intellectual developmental disorder with autism and macrocephaly|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 1673
NM_001170629.2(CHD8):c.4384C>T (p.Arg1462Ter)Pathogenic
not provided|Inborn genetic diseases|Intellectual developmental disorder with autism and macrocephaly
β˜…β˜…β˜†β˜†2024β†’ Residue 1462
View on ClinVar β†—
Related Genes
NSD3Protein interaction100%DPY30Protein interaction100%KMT2AProtein interaction98%RBBP5Protein interaction98%ASH2LProtein interaction98%KMT2BProtein interaction98%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
84%
Ovary
54%
Lung
51%
Heart
45%
Liver
32%
Gene Interaction Network
Click a node to explore
CHD8NSD3DPY30KMT2ARBBP5ASH2LKMT2B
PROTEIN STRUCTURE
Preparing viewer…
PDB2CKA Β· NMR
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.15Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.11 [0.08–0.15]
RankingsWhere CHD8 stands among ~20K protein-coding genes
  • #2,323of 20,598
    Most Researched185 Β· top quartile
  • #311of 5,498
    Most Pathogenic Variants212 Β· top 10%
  • #226of 17,882
    Most Constrained (LOEUF)0.15 Β· top 5%
Genes detectedCHD8
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Integrating de novo and inherited variants in 42,607 autism cases identifies mutations in new moderate-risk genes.
PMID: 35982159
Nat Genet Β· 2022
1.00
2
Sex-Based Analysis of De Novo Variants in Neurodevelopmental Disorders.
PMID: 31785789
Am J Hum Genet Β· 2019
0.90
3
Autism spectrum disorder: neuropathology and animal models.
PMID: 28584888
Acta Neuropathol Β· 2017
0.80
4
Autism genes converge on asynchronous development of shared neuron classes.
PMID: 35110736
Nature Β· 2022
0.70
5
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
PMID: 23160955
Science Β· 2012
0.64