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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CIART
circadian associated repressor of transcription
Chromosome 1 · 1q21.2
NCBI Gene: 148523Ensembl: ENSG00000159208.16HGNC: HGNC:25200UniProt: Q5TB12
21PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingRNA polymerase II cis-regulatory region sequence-specific DNA bindingnucleuscircadian regulation of gene expressionatopic eczemacoronary artery diseasecircadian rhythmAbruptio Placentae
✦AI Summary

CIART (circadian associated repressor of transcription) is a transcriptional repressor that forms a core negative regulatory component of the circadian clock independent of CRY1, CRY2, and BHLHE41 1. CIART represses CLOCK-BMAL1 heterodimer activity through histone deacetylase-dependent mechanisms, disrupting BMAL1-CREBBP interaction and reducing histone acetylation of circadian target genes 1. CIART rhythmically binds E-box elements on circadian gene promoters with antiphasic oscillation to BMAL1, and interacts with the glucocorticoid receptor to modulate glucocorticoid signaling 1. Disease relevance is emerging across multiple conditions. CIART expression is dysregulated in bipolar disorder, where imbalanced activation/repression within the circadian system distinguishes affected individuals from healthy controls 1. CIART functions as a key host factor controlling SARS-CoV-2 infection across lung and cardiac organoids through NR4A1 regulation and Retinoid X Receptor pathway modulation 2. CIART dysregulation is implicated in hypertensive complications 3, aging-related lens pathology 4, opioid-induced hyperalgesia 5, leukemia microenvironment remodeling 6, and sex hormone-dependent cardiac hypertrophy 7. ClockΔ19 studies link CIART disruption to hippocampal abnormalities resembling bipolar disorder pathology 8. Clinically, CIART represents a potential therapeutic target for COVID-19, circadian rhythm disorders, and hypertension management through circadian pathway modulation.

Sources cited
1
CIART is a circadian repressor functioning independently of CRY1/CRY2/BHLHE41; dysregulated in bipolar disorder with altered correlation to ARNTL, ARNTL2, DBP, PER2, and TIMELESS
PMID: 36481223
2
CIART controls SARS-CoV-2 infection across lung airway, alveolar organoids and cardiomyocytes through NR4A1 and Retinoid X Receptor pathway regulation
PMID: 36918693
3
ARB-modified microbiota increases intestinal CIART expression with protective effects against hypertensive vascular remodeling and metabolic abnormality
PMID: 39135690
4
Swimming exercise reverses aging-associated CIART expression changes in lens with dual association as aging gene and exercise-responsive gene regulating Rorb and Sptbn5
PMID: 38439070
5
CIART undergoes alternative splicing in opioid-induced hyperalgesia, identified as alternatively spliced transcription regulator in trigeminal ganglia
PMID: 34680965
6
CIART dysregulation in bone marrow adipose tissue mesenchymal stem cells links circadian rhythm, AhR signaling, and lipid metabolism in leukemia microenvironment
PMID: 40350529
7
CIART circadian clock gene expression is modulated differently by angiotensin II between control and ovariectomized elderly female mice in cardiac hypertrophy
PMID: 38799057
8
CIART is among key genes linking rhythmic processes to neural cell differentiation in ClockΔ19 hippocampus, a bipolar disorder model
PMID: 39855567
Disease Associationsⓘ20
atopic eczemaOpen Targets
0.36Weak
coronary artery diseaseOpen Targets
0.09Suggestive
circadian rhythmOpen Targets
0.07Suggestive
Abruptio PlacentaeOpen Targets
0.04Suggestive
breast carcinomaOpen Targets
0.04Suggestive
familial glucocorticoid deficiencyOpen Targets
0.04Suggestive
Abnormality of refractionOpen Targets
0.04Suggestive
hypothyroidismOpen Targets
0.03Suggestive
asthmaOpen Targets
0.03Suggestive
Decreased total leukocyte countOpen Targets
0.03Suggestive
PhlebitisOpen Targets
0.02Suggestive
ThrombophlebitisOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
bipolar disorderOpen Targets
0.01Suggestive
gliomaOpen Targets
0.01Suggestive
liver cancerOpen Targets
0.01Suggestive
pituitary cancerOpen Targets
0.01Suggestive
acute myeloid leukemiaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
BMAL1Protein interaction74%CRY2Protein interaction74%PER2Protein interaction74%BHLHE41Protein interaction74%PER3Protein interaction53%RAI1Shared pathway50%
Tissue Expression6 tissues
Heart
100%
Brain
56%
Ovary
34%
Liver
28%
Lung
16%
Bone Marrow
4%
Gene Interaction Network
Click a node to explore
CIARTBMAL1CRY2PER2BHLHE41PER3RAI1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q5TB12
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.61LoF Tolerant
pLIⓘ
0.82Intermediate
Observed/Expected LoF0.32 [0.18–0.61]
RankingsWhere CIART stands among ~20K protein-coding genes
  • #13,868of 20,598
    Most Researched21
  • #4,196of 17,882
    Most Constrained (LOEUF)0.61 · top quartile
Genes detectedCIART
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Gene expression of circadian genes and CIART in bipolar disorder: A preliminary case-control study.
PMID: 36481223
Prog Neuropsychopharmacol Biol Psychiatry · 2023
1.00
2
A multi-organoid platform identifies CIART as a key factor for SARS-CoV-2 infection.
PMID: 36918693
Nat Cell Biol · 2023
0.90
3
Intestinal microbiota by angiotensin receptor blocker therapy exerts protective effects against hypertensive damages.
PMID: 39135690
Imeta · 2024
0.80
4
Swimming exercise reverses transcriptomic changes in aging mouse lens.
PMID: 38439070
BMC Med Genomics · 2024
0.70
5
Alternative Splicing Mechanisms Underlying Opioid-Induced Hyperalgesia.
PMID: 34680965
Genes (Basel) · 2021
0.60