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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CLCA1
chloride channel accessory 1
Chromosome 1 · 1p22.3
NCBI Gene: 1179Ensembl: ENSG00000016490.17HGNC: HGNC:2015UniProt: A8K7I4
57PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
ProteaseTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
plasma membraneintracellularly calcium-gated chloride channel activitymonoatomic ion transmembrane transportmetalloendopeptidase activityhydronephrosissign or symptomcolorectal carcinomaneoplasm
✦AI Summary

CLCA1 (chloride channel accessory 1) functions primarily as a regulator of calcium-activated chloride conductance and mucus production in epithelial tissues. The protein facilitates the activity of TMEM16A (Anoctamin-1), a Ca2+-dependent Cl- channel, forming a functional chloride current axis 1. CLCA1 is secreted by goblet cells alongside other mucus components and plays a critical role in mucin regulation, specifically inducing MUC5AC expression in airway epithelium 23. The gene is prominently expressed in respiratory and gastrointestinal tissues where it contributes to innate immune responses and barrier function. Clinically, CLCA1 is significantly relevant in respiratory diseases, particularly asthma, where its expression in nasal epithelium serves as a biomarker for asthma endotypes and reflects lower airway pathology 4. In diabetic kidney disease, CLCA1 upregulation associates with kidney injury through mTORC1 activation and matrix protein accumulation 1. The protein also functions in intestinal innate immunity, with its release affected by bitter taste receptor signaling 5. Additionally, CLCA1 has emerged as a potential biomarker in colorectal cancer through aberrant N-glycosylation patterns 6. Therapeutic targeting of CLCA1 pathways shows promise for treating mucus overproduction in chr1 airway diseases 7.

Sources cited
1
CLCA1 facilitates TMEM16A activity forming a chloride current axis and is upregulated in diabetic kidney disease
PMID: 39782685
2
CLCA1 is secreted by goblet cells as a mucus component in the gastrointestinal tract
PMID: 24942678
3
CLCA1 induces MUC5AC expression and is associated with goblet cell hyperplasia in bronchial epithelium
PMID: 36684665
4
CLCA1 expression in nasal epithelium serves as a biomarker for asthma endotypes
PMID: 39009441
5
CLCA1 release is regulated by bitter taste receptors in intestinal innate immune responses
PMID: 34784295
6
CLCA1 identified as potential metabolic biomarker in colorectal cancer through N-glycosylation analysis
PMID: 40285620
7
CLCA1 is a target for therapeutics addressing mucus overproduction in chronic airway diseases
PMID: 26296094
Disease Associationsⓘ20
hydronephrosisOpen Targets
0.28Weak
sign or symptomOpen Targets
0.24Weak
colorectal carcinomaOpen Targets
0.10Weak
neoplasmOpen Targets
0.09Suggestive
cystic fibrosisOpen Targets
0.08Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.08Suggestive
Barrett's esophagusOpen Targets
0.08Suggestive
Hallux valgusOpen Targets
0.07Suggestive
ulcerative colitisOpen Targets
0.06Suggestive
rectum cancerOpen Targets
0.06Suggestive
primary ciliary dyskinesiaOpen Targets
0.06Suggestive
asthmaOpen Targets
0.05Suggestive
isolated agammaglobulinemiaOpen Targets
0.05Suggestive
idiopathic CD4 lymphocytopeniaOpen Targets
0.04Suggestive
colorectal cancerOpen Targets
0.04Suggestive
immunodeficiency 53Open Targets
0.04Suggestive
Chronic mucocutaneous candidosisOpen Targets
0.04Suggestive
immunodeficiency 51Open Targets
0.04Suggestive
Recurrent infection due to specific granule deficiencyOpen Targets
0.04Suggestive
combined immunodeficiency due to moesin deficiencyOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FKBP5Protein interaction97%ZG16Protein interaction93%POSTNProtein interaction90%FCGBPProtein interaction85%CFTRProtein interaction84%GUCA2AProtein interaction81%
Tissue Expression6 tissues
Ovary
100%
Liver
71%
Brain
36%
Lung
14%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CLCA1FKBP5ZG16POSTNFCGBPCFTRGUCA2A
PROTEIN STRUCTURE
Preparing viewer…
PDB6PYO · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.89LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.70 [0.56–0.89]
RankingsWhere CLCA1 stands among ~20K protein-coding genes
  • #7,947of 20,598
    Most Researched57
  • #8,015of 17,882
    Most Constrained (LOEUF)0.89
Genes detectedCLCA1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Secretory diarrhoea: mechanisms and emerging therapies.
PMID: 26122478
Nat Rev Gastroenterol Hepatol · 2015
1.00
2
The mucus and mucins of the goblet cells and enterocytes provide the first defense line of the gastrointestinal tract and interact with the immune system.
PMID: 24942678
Immunol Rev · 2014
0.90
3
CLCA1 and TMEM16A: the link towards a potential cure for airway diseases.
PMID: 26296094
Expert Rev Respir Med · 2015
0.80
4
Solithromycin inhibits IL-13-induced goblet cell hyperplasia and MUC5AC, CLCA1, and ANO1 in human bronchial epithelial cells.
PMID: 36684665
PeerJ · 2023
0.70
5
Deciphering the Metabolic Impact and Clinical Relevance of N-Glycosylation in Colorectal Cancer through Comprehensive Glycoproteomic Profiling.
PMID: 40285620
Adv Sci (Weinh) · 2025
0.60