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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CLDN3
claudin 3
Chromosome 7 · 7q11.23
NCBI Gene: 1365Ensembl: ENSG00000165215.6HGNC: HGNC:2045UniProt: O15551
126PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
bicellular tight junctionprotein bindingcell junctionidentical protein bindingneoplasmcolorectal carcinomanon-small cell lung carcinomaovarian cancer
✦AI Summary

CLDN3 (claudin 3) is a barrier-forming tight junction protein that plays a critical role in maintaining epithelial cell-cell adhesion and intercellular space obliteration through calcium-independent mechanisms 1. Beyond its structural function, CLDN3 expression is frequently dysregulated in multiple disease contexts. In cholangiocarcinoma, TET1-mediated CLDN3 promoter demethylation promotes epithelial-mesenchymal transition (EMT), while PPM1G-catalyzed TET1 dephosphorylation suppresses this pathway, suggesting therapeutic potential 2. In hepatocellular carcinoma, aberrant CLDN3 expression drives cancer progression through loss of intercellular adhesion and altered cell signaling 3. In colorectal cancer, HSF1 directly activates CLDN3 transcription to enhance cell proliferation, invasion, and migration 4. Conversely, reduced CLDN3 expression associates with pregnancy-induced hypertension, where upregulation promotes trophoblast proliferation and invasion via MMP/ERK1/2 pathways 5. CLDN3 promoter hypermethylation is common in esophageal squamous cell carcinoma and precursor lesions, enabling early detection 6. Recently, CLDN3 emerged as a glycolysis-related biomarker in gastric cancer 7 and immune-metabolic dysregulation in acute pancreatitis 8. Clinically, CLDN3's minimal expression in normal tissues coupled with tumor co-expression with EpCAM makes it an attractive target for bispecific antibody-drug conjugates 1.

Sources cited
1
CLDN3 (claudin 3) is a barrier-forming tight junction protein that plays a critical role in maintaining epithelial cell-cell adhesion and intercellular space obliteration through calcium-independent mechanisms .
PMID: 40057807
2
In cholangiocarcinoma, TET1-mediated CLDN3 promoter demethylation promotes epithelial-mesenchymal transition (EMT), while PPM1G-catalyzed TET1 dephosphorylation suppresses this pathway, suggesting therapeutic potential .
PMID: 39477806
3
In hepatocellular carcinoma, aberrant CLDN3 expression drives cancer progression through loss of intercellular adhesion and altered cell signaling .
PMID: 38185042
4
In colorectal cancer, HSF1 directly activates CLDN3 transcription to enhance cell proliferation, invasion, and migration .
PMID: 40162508
5
Conversely, reduced CLDN3 expression associates with pregnancy-induced hypertension, where upregulation promotes trophoblast proliferation and invasion via MMP/ERK1/2 pathways .
PMID: 32855729
6
CLDN3 promoter hypermethylation is common in esophageal squamous cell carcinoma and precursor lesions, enabling early detection .
PMID: 16685400
7
Recently, CLDN3 emerged as a glycolysis-related biomarker in gastric cancer and immune-metabolic dysregulation in acute pancreatitis .
PMID: 40865843
8
Recently, CLDN3 emerged as a glycolysis-related biomarker in gastric cancer and immune-metabolic dysregulation in acute pancreatitis .
PMID: 41200201
Disease Associationsⓘ20
neoplasmOpen Targets
0.11Weak
colorectal carcinomaOpen Targets
0.10Weak
non-small cell lung carcinomaOpen Targets
0.10Suggestive
ovarian cancerOpen Targets
0.10Suggestive
hepatocellular carcinomaOpen Targets
0.09Suggestive
cancerOpen Targets
0.09Suggestive
prostate cancerOpen Targets
0.09Suggestive
Barrett's esophagusOpen Targets
0.08Suggestive
lung cancerOpen Targets
0.08Suggestive
colitisOpen Targets
0.08Suggestive
triple-negative breast cancerOpen Targets
0.08Suggestive
AIDS dementiaOpen Targets
0.08Suggestive
cholangiocarcinomaOpen Targets
0.07Suggestive
ovarian carcinomaOpen Targets
0.06Suggestive
esophageal adenocarcinomaOpen Targets
0.06Suggestive
breast cancerOpen Targets
0.05Suggestive
posterior cortical atrophyOpen Targets
0.05Suggestive
gastric cancerOpen Targets
0.04Suggestive
CirrhosisOpen Targets
0.04Suggestive
hypertensionOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TJP1Protein interaction98%CLDN7Protein interaction92%F11RProtein interaction92%EPCAMProtein interaction91%MARVELD2Protein interaction89%TJP3Protein interaction87%
Tissue Expression6 tissues
Liver
100%
Brain
68%
Lung
11%
Ovary
0%
Bone Marrow
0%
Heart
0%
Gene Interaction Network
Click a node to explore
CLDN3TJP1CLDN7F11REPCAMMARVELD2TJP3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O15551
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.75LoF Tolerant
pLIⓘ
0.45Tolerant
Observed/Expected LoF0.38 [0.21–0.75]
RankingsWhere CLDN3 stands among ~20K protein-coding genes
  • #3,713of 20,598
    Most Researched126 · top quartile
  • #5,920of 17,882
    Most Constrained (LOEUF)0.75
Genes detectedCLDN3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Development of a bispecific antibody-drug conjugate targeting EpCAM and CLDN3 for the treatment of multiple solid tumors.
PMID: 40057807
Exp Hematol Oncol · 2025
1.00
2
PPM1G Inhibits Epithelial-Mesenchymal Transition in Cholangiocarcinoma by Catalyzing TET1 Dephosphorylation for Destabilization to Impair Its Targeted Demethylation of the CLDN3 Promoter.
PMID: 39477806
Adv Sci (Weinh) · 2024
0.90
3
Claudins and hepatocellular carcinoma.
PMID: 38185042
Biomed Pharmacother · 2024
0.80
4
CLDN3 expression and function in pregnancy-induced hypertension.
PMID: 32855729
Exp Ther Med · 2020
0.70
5
p16, MGMT, RARbeta2, CLDN3, CRBP and MT1G gene methylation in esophageal squamous cell carcinoma and its precursor lesions.
PMID: 16685400
Oncol Rep · 2006
0.60