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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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CLDN6
claudin 6
Chromosome 16 · 16p13.3
NCBI Gene: 9074Ensembl: ENSG00000184697.8HGNC: HGNC:2048UniProt: P56747
84PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Receptor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingvirus receptor activityplasma membranecell-cell adhesion mediator activityneurodegenerative diseasebreast cancerneoplasmcancer
✦AI Summary

CLDN6 (claudin 6) is a tight junction protein that functions as both a tumor suppressor and therapeutic target in cancer. As a member of the claudin family, CLDN6 normally participates in cell-cell adhesion and tight junction assembly 1. In breast cancer, CLDN6 acts as a tumor suppressor by inhibiting growth and metastasis through regulation of fatty acid metabolism, specifically by preventing RAS palmitoylation via the MAGI2/KLF5/SREBP1 pathway 1. However, CLDN6 exhibits oncofetal antigen properties, being absent from normal adult tissues but aberrantly upregulated in various malignancies including ovarian, endometrial, and germ cell tumors 234. This tumor-specific expression pattern makes CLDN6 an attractive therapeutic target. Multiple CLDN6-directed therapies are under clinical investigation, including antibody-drug conjugates (ADCs), T-cell engagers, CAR-T cells, and RNA-encoded bispecific antibodies 56274. Clinical trials have demonstrated promising efficacy, with objective response rates of 28-60% for CLDN6-targeted ADCs and 33% for CLDN6 CAR-T cells in solid tumors 84. The dual nature of CLDN6 as both tumor suppressor and therapeutic target highlights its complex role in cancer biology.

Sources cited
1
CLDN6 functions in tight junction assembly and acts as tumor suppressor in breast cancer through MAGI2/KLF5/SREBP1 pathway regulation of RAS palmitoylation
PMID: 39169280
2
CLDN6 is absent from normal adult tissue but elevated in ovarian and endometrial cancers, making it suitable for ADC targeting
PMID: 36884217
3
CLDN6 shows subtype-specific expression in CNS tumors and is strongly expressed in atypical teratoid/rhabdoid tumors
PMID: 37870091
4
CLDN6 CAR-T cells achieved 33% objective response rate in solid tumors with manageable toxicity profile
PMID: 37872225
5
SAIL66 tri-specific antibody targeting CLDN6/CD3/CD137 demonstrates potent antitumor efficacy in preclinical studies
PMID: 39401967
6
BNT142 RNA-encoded bispecific antibody targeting CLDN6 shows therapeutic efficacy in preclinical models
PMID: 38776391
7
CLDN6-CAR NK cells effectively eliminate ovarian cancer cells and show synergy with immune checkpoint inhibitors
PMID: 38481806
8
CLDN6-targeted therapies including ADCs show objective response rates of 28-60% in clinical trials
PMID: 39301632
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.43Moderate
breast cancerOpen Targets
0.12Weak
neoplasmOpen Targets
0.11Weak
cancerOpen Targets
0.11Weak
ovarian cancerOpen Targets
0.10Weak
gastric cancerOpen Targets
0.10Suggestive
non-small cell lung carcinomaOpen Targets
0.09Suggestive
endometrial cancerOpen Targets
0.09Suggestive
urinary bladder carcinomaOpen Targets
0.08Suggestive
esophageal adenocarcinomaOpen Targets
0.08Suggestive
metabolic syndromeOpen Targets
0.07Suggestive
Granular Cell TumorOpen Targets
0.06Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
invasive breast ductal carcinomaOpen Targets
0.04Suggestive
colorectal carcinomaOpen Targets
0.04Suggestive
AIDS dementiaOpen Targets
0.03Suggestive
dermatitisOpen Targets
0.03Suggestive
endometrial endometrioid carcinomaOpen Targets
0.03Suggestive
infectionOpen Targets
0.02Suggestive
germ cell tumorOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TJP1Protein interaction98%OCLNProtein interaction96%TJP3Protein interaction87%TJP2Protein interaction85%CLDN9Protein interaction83%CLDN18Protein interaction78%
Tissue Expression6 tissues
Brain
100%
Heart
43%
Liver
29%
Lung
29%
Ovary
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CLDN6TJP1OCLNTJP3TJP2CLDN9CLDN18
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P56747
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.76LoF Tolerant
pLIⓘ
0.24Tolerant
Observed/Expected LoF0.53 [0.17–1.76]
RankingsWhere CLDN6 stands among ~20K protein-coding genes
  • #5,659of 20,598
    Most Researched84
  • #16,403of 17,882
    Most Constrained (LOEUF)1.76
Genes detectedCLDN6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
CLDN6 inhibits breast cancer growth and metastasis through SREBP1-mediated RAS palmitoylation.
PMID: 39169280
Cell Mol Biol Lett · 2024
1.00
2
SAIL66, a next generation CLDN6-targeting T-cell engager, demonstrates potent antitumor efficacy through dual binding to CD3/CD137.
PMID: 39401967
J Immunother Cancer · 2024
0.90
3
Preclinical efficacy and pharmacokinetics of an RNA-encoded T cell-engaging bispecific antibody targeting human claudin 6.
PMID: 38776391
Sci Transl Med · 2024
0.80
4
Preclinical Efficacy of the Antibody-Drug Conjugate CLDN6-23-ADC for the Treatment of CLDN6-Positive Solid Tumors.
PMID: 36884217
Clin Cancer Res · 2023
0.70
5
Claudin 1, 4, 6 and 18 isoform 2 as targets for the treatment of cancer (Review).
PMID: 39301632
Int J Mol Med · 2024
0.60