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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CLOCK
clock circadian regulator
Chromosome 4 · 4q12
NCBI Gene: 9575Ensembl: ENSG00000134852.16HGNC: HGNC:2082UniProt: O15516
313PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA polymerase II cis-regulatory region sequence-specific DNA bindingDNA bindinghistone acetyltransferase activityprotein bindingneurodegenerative diseasehypertensionpreeclampsiaProptosis
✦AI Summary

CLOCK (circadian locomotor output cycles kaput) is a core transcriptional regulator of the mammalian circadian clock that generates ~24-hour rhythms in gene expression controlling metabolism, sleep, body temperature, and cardiovascular function 1. As a heterodimeric partner with BMAL1, CLOCK activates transcription of clock genes (PER, CRY) and metabolic genes by binding E-box elements in promoters 2. CLOCK possesses intrinsic histone acetyltransferase activity enabling chr4 remodeling and rhythmic regulation of metabolic enzymes [PMID:28985504 via UniProt]. Circadian disruption through altered CLOCK expression contributes to metabolic pathologies including obesity, type 2 diabetes, and cardiovascular disease 1. In cancer, CLOCK amplification (5% of glioblastomas) enhances glioma stem cell self-renewal and recruits immunosuppressive microglia via OLFML3 upregulation, promoting tumor growth 3. In hepatocellular carcinoma, oncogenic signaling phosphorylates CLOCK at S106, causing nuclear export and cytosolic acetylation of PRPS to promote nucleotide synthesis and proliferation 4. CLOCK variants are associated with psychiatric disorders including depression, bipolar disorder, and schizophrenia 5. Human-specific neocortical CLOCK expression enhances cognitive flexibility through increased dendritic complexity and synaptic connectivity 6.

Sources cited
1
Circadian disruption and altered CLOCK expression contribute to metabolic pathologies including obesity, metabolic syndrome, and type 2 diabetes
PMID: 39007272
2
CLOCK is a core clock gene identified in humans with important role in circadian regulation
PMID: 12452483
3
CLOCK is amplified in ~5% of glioblastomas and enhances glioma stem cell self-renewal and protumor immunity via OLFML3
PMID: 31919052
4
Oncogenic signaling phosphorylates CLOCK S106 promoting nuclear export and cytosolic CLOCK-mediated acetylation of PRPS to enhance nucleotide synthesis and hepatocellular carcinoma growth
PMID: 36646788
5
CLOCK gene alterations are associated with psychiatric disorders including depression, bipolar disorder, schizophrenia, and anxiety disorders
PMID: 28902457
6
Human-specific CLOCK expression in neocortex enhances cognitive flexibility through increased dendritic complexity and synaptic connectivity
PMID: 40588680
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.38Weak
hypertensionOpen Targets
0.29Weak
preeclampsiaOpen Targets
0.28Weak
ProptosisOpen Targets
0.28Weak
sialadenitisOpen Targets
0.24Weak
essential hypertensionOpen Targets
0.21Weak
Abnormality of the skeletal systemOpen Targets
0.14Weak
type 2 diabetes mellitusOpen Targets
0.12Weak
neoplasmOpen Targets
0.12Weak
cancerOpen Targets
0.12Weak
Alzheimer diseaseOpen Targets
0.11Weak
colorectal carcinomaOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.11Weak
breast cancerOpen Targets
0.11Weak
carpal tunnel syndromeOpen Targets
0.11Weak
obstructive sleep apneaOpen Targets
0.11Weak
glioblastoma multiformeOpen Targets
0.10Weak
obesityOpen Targets
0.10Weak
metabolic syndromeOpen Targets
0.10Suggestive
Parkinson diseaseOpen Targets
0.09Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CSNK1DProtein interaction100%CSNK1EProtein interaction100%NFIL3Protein interaction100%NPAS2Protein interaction100%RORAProtein interaction100%RORBProtein interaction100%
Tissue Expression6 tissues
Heart
100%
Brain
83%
Ovary
53%
Lung
51%
Liver
43%
Bone Marrow
15%
Gene Interaction Network
Click a node to explore
CLOCKCSNK1DCSNK1ENFIL3NPAS2RORARORB
PROTEIN STRUCTURE
Preparing viewer…
PDB6QPJ · 2.31 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.50Moderately Constrained
pLIⓘ
0.97Intolerant
Observed/Expected LoF0.37 [0.27–0.50]
RankingsWhere CLOCK stands among ~20K protein-coding genes
  • #1,084of 20,598
    Most Researched313 · top 10%
  • #2,945of 17,882
    Most Constrained (LOEUF)0.50 · top quartile
Genes detectedCLOCK
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Circadian disruption, clock genes, and metabolic health.
PMID: 39007272
J Clin Invest · 2024
1.00
2
Clocks, cancer, and chronochemotherapy.
PMID: 33384351
Science · 2021
0.90
3
Clock genes alterations and endocrine disorders.
PMID: 29577261
Eur J Clin Invest · 2018
0.84
4
Circadian Regulator CLOCK Recruits Immune-Suppressive Microglia into the GBM Tumor Microenvironment.
PMID: 31919052
Cancer Discov · 2020
0.80
5
Interaction of Clock gene variants and behavioral parameters influences adiposity-related traits.
PMID: 39588670
Chronobiol Int · 2024
0.72