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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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COQ4
coenzyme Q4
Chromosome 9 Β· 9q34.11
NCBI Gene: 51117Ensembl: ENSG00000167113.12HGNC: HGNC:19693UniProt: Q9Y3A0
42PubMed Papers
22Diseases
0Drugs
42Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingubiquinone biosynthetic processmitochondrionmitochondrial inner membraneneonatal encephalomyopathy-cardiomyopathy-respiratory distress syndromespastic ataxia 10, autosomal recessivecoenzyme Q10 deficiencyneurodegenerative disease
✦AI Summary

COQ4 encodes a mitochondrial protein essential for coenzyme Q10 (CoQ10) biosynthesis, functioning as a lyase that catalyzes the oxidative decarboxylation of the C1 carbon of CoQ precursors 1. The protein localizes to the mitochondrial inner membrane and acts both as a structural component of the CoQ biosynthetic complex and as an enzyme performing the C1-decarboxylation step during ubiquinone biosynthesis 21. COQ4 deficiency causes primary CoQ10 deficiency with heterogeneous clinical presentations ranging from severe early-onset neurodegeneration to milder adult-onset hereditary spastic paraplegia (HSP) 34. Three distinct phenotypes have been identified: type 1 with neonatal brain anomalies and epileptic encephalopathy, type 2 with stroke-like lesions, and type 3 with stable disease course 3. Recent studies demonstrate that biallelic COQ4 variants can cause adult-onset ataxia-spasticity spectrum disorders, expanding the known phenotypic range beyond severe pediatric presentations 56. Functional studies in patient cells show reduced COQ4 protein levels, decreased CoQ10 concentrations, and elevated metabolic intermediates, confirming the pathogenic nature of identified variants 34. Clinical response to CoQ10 supplementation remains limited, necessitating alternative therapeutic approaches 3.

Sources cited
1
COQ4 catalyzes oxidative decarboxylation of C1 carbon in CoQ biosynthesis
PMID: 38295803
2
COQ4 is mitochondrial protein essential for CoQ biosynthesis and acts as structural component
PMID: 18474229
3
COQ4 deficiency causes three distinct phenotypic patterns and shows poor response to CoQ10 supplementation
PMID: 34656997
4
Biallelic COQ4 variants cause hereditary spastic paraplegia with functional impairment
PMID: 38014483
5
COQ4 variants cause adult-onset ataxia-spasticity spectrum with milder phenotype
PMID: 36047608
6
COQ4-associated HSP has relatively mild course with childhood to adult onset
PMID: 39776381
Disease Associationsβ“˜22
neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndromeOpen Targets
0.84Strong
spastic ataxia 10, autosomal recessiveOpen Targets
0.75Strong
coenzyme Q10 deficiencyOpen Targets
0.66Moderate
neurodegenerative diseaseOpen Targets
0.52Moderate
spastic ataxiaOpen Targets
0.48Moderate
genetic disorderOpen Targets
0.48Moderate
mitochondrial diseaseOpen Targets
0.37Weak
rhabdomyolysisOpen Targets
0.37Weak
developmental disorder of mental healthOpen Targets
0.33Weak
hereditary spastic paraplegiaOpen Targets
0.13Weak
obesityOpen Targets
0.10Suggestive
hypertensionOpen Targets
0.02Suggestive
hyperinsulinemic hypoglycemia, familial, 4Open Targets
0.01Suggestive
mitochondrial encephalomyopathyOpen Targets
0.01Suggestive
EncephalopathyOpen Targets
0.01Suggestive
Spastic paraplegiaOpen Targets
0.01Suggestive
AtaxiaOpen Targets
0.01Suggestive
epilepsyOpen Targets
0.01Suggestive
Neurodevelopmental disorderOpen Targets
0.01Suggestive
astrocytomaOpen Targets
0.01Suggestive
Coenzyme Q10 deficiency, primary, 7UniProt
Spastic ataxia 10, autosomal recessiveUniProt
Pathogenic Variants42
NM_016035.5(COQ4):c.402+1G>APathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome|not provided
β˜…β˜…β˜†β˜†2026
NM_016035.5(COQ4):c.370G>A (p.Gly124Ser)Pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome|Spastic ataxia 10, autosomal recessive
β˜…β˜…β˜†β˜†2026β†’ Residue 124
NM_016035.5(COQ4):c.23_33del (p.Val8fs)Pathogenic
not provided|Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome|Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome;Spastic ataxia 10, autosomal recessive
β˜…β˜…β˜†β˜†2025β†’ Residue 8
NM_016035.5(COQ4):c.718C>T (p.Arg240Cys)Pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome|not provided|Spastic ataxia|Inborn genetic diseases|COQ4-related disorder|Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome;Spastic ataxia 10, autosomal recessive
β˜…β˜…β˜†β˜†2025β†’ Residue 240
NM_016035.5(COQ4):c.202G>C (p.Asp68His)Pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome|Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 68
NM_016035.5(COQ4):c.402+1G>CPathogenic
not provided|Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome|COQ4-related disorder|Spastic ataxia 10, autosomal recessive|Spastic ataxia 10, autosomal recessive;Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜…β˜†β˜†2025
NM_016035.5(COQ4):c.613C>T (p.Arg205Ter)Pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome|Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome;Spastic ataxia 10, autosomal recessive
β˜…β˜…β˜†β˜†2025β†’ Residue 205
NM_016035.5(COQ4):c.301G>T (p.Glu101Ter)Pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome|not provided|COQ4-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 101
NM_016035.5(COQ4):c.300-2A>GLikely pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome|not provided
β˜…β˜…β˜†β˜†2023
NM_016035.5(COQ4):c.385dup (p.Arg129fs)Pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 129
NM_016035.5(COQ4):c.70+2C>ALikely pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2025
NM_016035.5(COQ4):c.529del (p.Leu177fs)Likely pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 177
NM_016035.5(COQ4):c.662G>A (p.Trp221Ter)Pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 221
NM_016035.5(COQ4):c.70+2C>GLikely pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2025
NM_016035.5(COQ4):c.223G>T (p.Glu75Ter)Pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 75
NM_016035.5(COQ4):c.431C>A (p.Thr144Asn)Likely pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 144
NM_016035.5(COQ4):c.479G>A (p.Arg160Gln)Likely pathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 160
NM_016035.5(COQ4):c.626+1G>CPathogenic
Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2024
NM_016035.5(COQ4):c.409dup (p.Ser137fs)Likely pathogenic
Spastic ataxia 10, autosomal recessive
β˜…β˜†β˜†β˜†2024β†’ Residue 137
NM_016035.5(COQ4):c.627-1G>ALikely pathogenic
Spastic ataxia 10, autosomal recessive;Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome
β˜…β˜†β˜†β˜†2024
View on ClinVar β†—
Related Genes
COQ9Protein interaction100%COQ6Protein interaction99%SLC35D1Protein interaction88%COQ5Protein interaction81%PDSS1Protein interaction81%COQ8BProtein interaction79%
Tissue Expression6 tissues
Liver
100%
Ovary
63%
Bone Marrow
47%
Heart
41%
Lung
41%
Brain
37%
Gene Interaction Network
Click a node to explore
COQ4COQ9COQ6SLC35D1COQ5PDSS1COQ8B
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9Y3A0
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.65LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.24 [0.94–1.65]
RankingsWhere COQ4 stands among ~20K protein-coding genes
  • #9,853of 20,598
    Most Researched42
  • #1,495of 5,498
    Most Pathogenic Variants42
  • #15,875of 17,882
    Most Constrained (LOEUF)1.65
Genes detectedCOQ4
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Comprehensive analysis of lactate-related gene profiles and immune characteristics in lupus nephritis.
PMID: 38455045
Front Immunol Β· 2024
1.00
2
Human COQ4 deficiency: delineating the clinical, metabolic and neuroimaging phenotypes.
PMID: 34656997
J Med Genet Β· 2022
0.90
3
Diagnostic exome sequencing provides a molecular diagnosis for a significant proportion of patients with epilepsy.
PMID: 26795593
Genet Med Β· 2016
0.80
4
Biallelic COQ4 Variants in Hereditary Spastic Paraplegia: Clinical and Molecular Characterization.
PMID: 38014483
Mov Disord Β· 2024
0.70
5
Functional characterization of human COQ4, a gene required for Coenzyme Q10 biosynthesis.
PMID: 18474229
Biochem Biophys Res Commun Β· 2008
0.60