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25 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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CPSF6
cleavage and polyadenylation specific factor 6
Chromosome 12 · 12q15
NCBI Gene: 11052Ensembl: ENSG00000111605.19HGNC: HGNC:13871UniProt: Q16630
263PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingmRNA cleavage factor complexribonucleoprotein complexmRNA bindingcancerAbnormality of the skeletal systemneurodegenerative diseasesmoking initiation
✦AI Summary

CPSF6 (cleavage and polyadenylation specific factor 6) is a multifunctional protein that regulates mRNA 3'-end processing and serves as a critical HIV-1 host factor. Its primary function involves controlling alternative polyadenylation (APA), which affects approximately 70% of gene expression by altering 3'-UTR lengths 1. CPSF6 undergoes liquid-liquid phase separation (LLPS) to regulate APA switching, with elevated LLPS promoting distal polyadenylation site usage and longer 3'-UTRs 2. The protein functions as part of the cleavage factor I mammalian (CFIm) complex and localizes to various nuclear compartments including paraspeckles and nuclear speckles 13. In viral infection, CPSF6 binds HIV-1 capsid and promotes preintegration complex function, facilitating viral DNA integration into gene-dense chr12 regions 34. HIV-1 infection triggers CPSF6 relocalization from paraspeckles to nuclear speckles, forming puncta-like structures that alter cellular APA patterns 15. Clinically, CPSF6 shows oncogenic properties in lung adenocarcinoma, where elevated expression correlates with poor prognosis and promotes cancer cell proliferation through PI3K/AKT pathway regulation 6. CPSF6-mediated APA changes also contribute to chemotherapy resistance by modulating endoplasmic reticulum stress responses 7.

Sources cited
1
CPSF6 regulates alternative polyadenylation affecting 70% of gene expression and relocalizes during HIV-1 infection
PMID: 40827274
2
CPSF6 undergoes liquid-liquid phase separation to regulate alternative polyadenylation and 3'-UTR lengths
PMID: 37777964
3
CPSF6 functions as part of CFIm complex and promotes HIV-1 preintegration complex function and integration targeting
PMID: 40202316
4
CPSF6 binds HIV-1 capsid and facilitates viral nuclear import and integration into gene-rich chromatin regions
PMID: 33572761
5
HIV-1 infection induces CPSF6 relocalization to form nuclear MLOs supporting viral replication
PMID: 37061085
6
CPSF6 shows oncogenic properties in lung adenocarcinoma with poor prognostic correlation and PI3K/AKT pathway involvement
PMID: 36446361
7
CPSF6-mediated APA changes contribute to chemotherapy resistance through ER stress modulation
PMID: 36821972
Disease Associationsⓘ20
cancerOpen Targets
0.58Moderate
Abnormality of the skeletal systemOpen Targets
0.49Moderate
neurodegenerative diseaseOpen Targets
0.46Moderate
smoking initiationOpen Targets
0.45Moderate
hypertensionOpen Targets
0.39Weak
osteoarthritisOpen Targets
0.38Weak
leukemiaOpen Targets
0.37Weak
myelodysplastic syndromeOpen Targets
0.37Weak
acute lymphoblastic leukemiaOpen Targets
0.37Weak
chronic myelogenous leukemiaOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
essential hypertensionOpen Targets
0.33Weak
tendon sheath disorderOpen Targets
0.32Weak
substance abuseOpen Targets
0.31Weak
obesityOpen Targets
0.31Weak
carpal tunnel syndromeOpen Targets
0.31Weak
attention deficit hyperactivity disorderOpen Targets
0.31Weak
smoking behaviorOpen Targets
0.31Weak
brain diseaseOpen Targets
0.27Weak
PainOpen Targets
0.24Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CPSF1Protein interaction100%ELAVL1Protein interaction99%CPSF3Protein interaction99%CPSF2Protein interaction99%FIP1L1Protein interaction99%WDR33Protein interaction98%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
70%
Lung
31%
Brain
28%
Heart
22%
Liver
22%
Gene Interaction Network
Click a node to explore
CPSF6CPSF1ELAVL1CPSF3CPSF2FIP1L1WDR33
PROTEIN STRUCTURE
Preparing viewer…
PDB4B4N · 1.81 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.31Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.16 [0.09–0.31]
RankingsWhere CPSF6 stands among ~20K protein-coding genes
  • #1,431of 20,598
    Most Researched263 · top 10%
  • #1,196of 17,882
    Most Constrained (LOEUF)0.31 · top 10%
Genes detectedCPSF6
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
CPSF6 regulates alternative polyadenylation and proliferation of cancer cells through phase separation.
PMID: 37777964
Cell Rep · 2023
1.00
2
Structural and mechanistic bases for a potent HIV-1 capsid inhibitor.
PMID: 33060363
Science · 2020
0.90
3
Structure, Function, and Interactions of the HIV-1 Capsid Protein.
PMID: 33572761
Life (Basel) · 2021
0.80
4
HIV-Induced CPSF6 Condensates.
PMID: 37061085
J Mol Biol · 2023
0.70
5
A global study for acute myeloid leukemia with RARG rearrangement.
PMID: 36799929
Blood Adv · 2023
0.68