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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CRY1
cryptochrome circadian regulator 1
Chromosome 12 · 12q23.3
NCBI Gene: 1407Ensembl: ENSG00000008405.13HGNC: HGNC:2384UniProt: A2I2P0
138PubMed Papers
21Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
ReceptorTranscription Factor
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusprotein bindingdeoxyribodipyrimidine photo-lyase activitynuclear receptor bindinginsomniaattention deficit hyperactivity disorderkidney diseaseovarian dysfunction
✦AI Summary

CRY1 is a core transcriptional repressor component of the circadian molecular clock that regulates approximately 24-hour rhythms in gene expression and physiological processes 1. CRY1 functions within a transcription-translation feedback loop where it forms complexes with PER proteins to inhibit CLOCK-BMAL1 heterodimers, thereby negatively regulating its own expression and other clock-controlled genes 2. A dominant coding variant in CRY1 causes familial delayed sleep phase disorder (DSPD) by creating an enhanced transcriptional inhibitor with increased affinity for CLOCK and BMAL1, leading to lengthened circadian periods and altered sleep timing 1. This variant affects up to 0.6% of the population and correlates with late sleep patterns 1. CRY1 variants are also associated with cluster headache, particularly in patients with diurnal attack rhythmicity 3. Beyond circadian regulation, CRY1 influences metabolic processes, with polymorphisms interacting with dietary patterns to affect obesity measures 4. Additionally, CRY1 regulates cellular senescence in ovarian granulosa cells through NCOA4-mediated ferritinophagy, with reduced expression linked to age-related fertility decline 5. CRY1 expression can be therapeutically modulated, as demonstrated by butyrate supplementation upregulating CRY1 in ulcerative colitis patients alongside improved inflammation and sleep quality 6.

Sources cited
1
CRY1 is a core circadian clock component and a dominant variant causes familial DSPD through enhanced transcriptional repression
PMID: 28388406
2
CRY1 functions in transcription-translation feedback loops with CLOCK-BMAL1 complexes
PMID: 38938563
3
CRY1 variants are associated with cluster headache, particularly with diurnal attack patterns
PMID: 34256648
4
CRY1 polymorphisms interact with dietary patterns to influence obesity measures
PMID: 35706856
5
CRY1 regulates ovarian granulosa cell senescence through NCOA4-mediated ferritinophagy
PMID: 38522484
6
Butyrate supplementation upregulates CRY1 expression in ulcerative colitis patients with therapeutic benefits
PMID: 39003477
Disease Associationsⓘ21
insomniaOpen Targets
0.54Moderate
attention deficit hyperactivity disorderOpen Targets
0.43Moderate
kidney diseaseOpen Targets
0.30Weak
ovarian dysfunctionOpen Targets
0.29Weak
metabolic diseaseOpen Targets
0.29Weak
ovarian neoplasmOpen Targets
0.25Weak
adolescent idiopathic scoliosisOpen Targets
0.25Weak
VitiligoOpen Targets
0.24Weak
neurodegenerative diseaseOpen Targets
0.18Weak
head and neck malignant neoplasiaOpen Targets
0.17Weak
chronic lymphocytic leukemiaOpen Targets
0.10Suggestive
azoospermiaOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
cancerOpen Targets
0.08Suggestive
osteosarcomaOpen Targets
0.08Suggestive
colorectal cancerOpen Targets
0.08Suggestive
posterior cortical atrophyOpen Targets
0.08Suggestive
partial chromosome Y deletionOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
Delayed sleep phase syndromeUniProt
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NPAS2Protein interaction100%FBXL3Protein interaction100%CSNK1EProtein interaction100%PER3Protein interaction100%TIMELESSProtein interaction100%CSNK1DProtein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
72%
Lung
64%
Liver
58%
Heart
50%
Ovary
43%
Gene Interaction Network
Click a node to explore
CRY1NPAS2FBXL3CSNK1EPER3TIMELESSCSNK1D
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q16526
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.73LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.57 [0.44–0.73]
RankingsWhere CRY1 stands among ~20K protein-coding genes
  • #3,331of 20,598
    Most Researched138 · top quartile
  • #5,706of 17,882
    Most Constrained (LOEUF)0.73
Genes detectedCRY1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Mutation of the Human Circadian Clock Gene CRY1 in Familial Delayed Sleep Phase Disorder.
PMID: 28388406
Cell · 2017
1.00
2
Cryptochrome 1 regulates ovarian granulosa cell senescence through NCOA4-mediated ferritinophagy.
PMID: 38522484
Free Radic Biol Med · 2024
0.90
3
"Time" for obesity-related cancer: The role of the circadian rhythm in cancer pathogenesis and treatment.
PMID: 36893964
Semin Cancer Biol · 2023
0.80
4
Interaction of Cry1 Gene Polymorphisms and Dominant Food Patterns on Obesity: A Cross-Sectional Study.
PMID: 35706856
Int J Prev Med · 2022
0.70
5
BMAL2 promotes eCIRP-induced macrophage endotoxin tolerance.
PMID: 38938563
Front Immunol · 2024
0.60