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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
CTSK
cathepsin K
Chromosome 1 Β· 1q21.3
NCBI Gene: 1513Ensembl: ENSG00000143387.15HGNC: HGNC:2536UniProt: P43235
206PubMed Papers
21Diseases
3Drugs
133Pathogenic Variants
FUNCTIONAL ROLE
Protease
RESEARCH IMPACT
Variant-Rich
CLINICAL
Clinical TrialsOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
collagen catabolic processfibronectin bindingcysteine-type endopeptidase activityprotein bindingpycnodysostosisgenetic disorderosteoporosisneurodegenerative disease
✦AI Summary

Cathepsin K (CTSK) is a lysosomal cysteine protease of the papain superfamily that plays a central role in bone homeostasis and extracellular matrix degradation 1. The gene spans approximately 12.1 kb on chromosome 1, consisting of eight exons and seven introns 2. CTSK is abundantly expressed in osteoclasts where it performs specialized functions in bone resorption 2, and is also expressed by immune cells including dendritic cells, macrophages, and T cells, where it modulates inflammation and immunity through NF-ΞΊB, TLR, and RANKL/RANK/OPG signaling pathways 1. Beyond bone, CTSK participates in extracellular matrix disassembly in multiple tissues. In the cornea, strong CTSK expression is associated with pathological collagen destruction in keratoconus 3. In skeletal muscle, elevated CTSK expression correlates with muscle injury and necrosis in Duchenne muscular dystrophy 4. Loss-of-function mutations in CTSK cause pycnodysostosis, a rare autosomal recessive skeletal dysplasia characterized by osteosclerosis, distal phalanx osteolysis, and craniofacial dysmorphism 5. Conversely, CTSK overexpression appears in rheumatoid arthritis, periodontitis, atherosclerosis, and castration-resistant prostate cancer, where elevated CTSK correlates with disease activity and tissue destruction 16. Small-molecule inhibitors and monoclonal antibodies targeting CTSK are emerging as therapeutic options for these inflammatory and malignant conditions 1.

Sources cited
1
CTSK is a lysosomal cysteine protease expressed by immune cells that modulates inflammation through NF-ΞΊB and RANKL/RANK/OPG pathways; elevated in rheumatoid arthritis, periodontitis, and other inflammatory diseases; targeted inhibitors show therapeutic promise
PMID: 41065357
2
CTSK gene spans 12.1 kb on chromosome 1q21 with eight exons and seven introns; abundantly expressed in osteoclasts for bone resorption
PMID: 9143491
3
Loss-of-function mutations in CTSK cause pycnodysostosis, an autosomal recessive skeletal dysplasia with osteosclerosis and distal phalanx osteolysis
PMID: 35315254
4
CTSK is strongly expressed in keratoconus cornea and contributes to pathological collagen destruction
PMID: 16783151
5
CTSK expression is significantly elevated in Duchenne muscular dystrophy skeletal muscle and is associated with muscle injury and necrosis
PMID: 39014877
6
CTSK is significantly upregulated in castration-resistant prostate cancer and regulates tumor growth and metastasis through IL-17/EMT axis
PMID: 36138018
Disease Associationsβ“˜21
pycnodysostosisOpen Targets
0.84Strong
genetic disorderOpen Targets
0.45Moderate
osteoporosisOpen Targets
0.40Moderate
neurodegenerative diseaseOpen Targets
0.37Weak
skeletal dysplasiaOpen Targets
0.36Weak
Increased susceptibility to fracturesOpen Targets
0.36Weak
MacrocephalyOpen Targets
0.36Weak
Nail dysplasiaOpen Targets
0.36Weak
Short statureOpen Targets
0.36Weak
postmenopausal osteoporosisOpen Targets
0.34Weak
Delayed cranial suture closureOpen Targets
0.33Weak
scoliosisOpen Targets
0.33Weak
Short phalanx of fingerOpen Targets
0.33Weak
breast cancerOpen Targets
0.29Weak
Abnormality of the skeletal systemOpen Targets
0.27Weak
prostate cancerOpen Targets
0.27Weak
atrial flutterOpen Targets
0.18Weak
atrial fibrillationOpen Targets
0.17Weak
Nasal Cavity PolypOpen Targets
0.17Weak
squamous cell carcinomaOpen Targets
0.17Weak
PycnodysostosisUniProt
Pathogenic Variants133
NM_000396.4(CTSK):c.436G>C (p.Gly146Arg)Pathogenic
Pyknodysostosis|Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 146
NM_000396.4(CTSK):c.934C>T (p.Arg312Ter)Pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 312
NM_000396.4(CTSK):c.926T>C (p.Leu309Pro)Pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 309
NM_000396.4(CTSK):c.3G>A (p.Met1Ile)Pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_000396.4(CTSK):c.290del (p.Leu97fs)Pathogenic
not provided|Pyknodysostosis
β˜…β˜…β˜†β˜†2025β†’ Residue 97
NM_000396.4(CTSK):c.190_200del (p.Ala64fs)Pathogenic
not provided|Pyknodysostosis
β˜…β˜…β˜†β˜†2025β†’ Residue 64
NM_000396.4(CTSK):c.338del (p.Gly113fs)Pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 113
NM_000396.4(CTSK):c.9del (p.Leu4fs)Likely pathogenic
Pyknodysostosis
β˜…β˜…β˜†β˜†2025β†’ Residue 4
NM_000396.4(CTSK):c.213T>A (p.Tyr71Ter)Pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 71
NM_000396.4(CTSK):c.953G>A (p.Cys318Tyr)Pathogenic
not provided|Abnormality of the skeletal system|Pyknodysostosis
β˜…β˜…β˜†β˜†2025β†’ Residue 318
NM_000396.4(CTSK):c.158dup (p.Asn53fs)Pathogenic
not provided|Pyknodysostosis
β˜…β˜…β˜†β˜†2025β†’ Residue 53
NM_000396.4(CTSK):c.908G>A (p.Gly303Glu)Pathogenic
not provided|Pyknodysostosis
β˜…β˜…β˜†β˜†2025β†’ Residue 303
NM_000396.4(CTSK):c.737_738del (p.Ser246fs)Pathogenic
not provided|Pyknodysostosis
β˜…β˜…β˜†β˜†2025β†’ Residue 246
NM_000396.4(CTSK):c.721C>T (p.Arg241Ter)Pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 241
NM_000396.4(CTSK):c.818del (p.Asn273fs)Pathogenic
not provided|Pyknodysostosis
β˜…β˜…β˜†β˜†2025β†’ Residue 273
NM_000396.4(CTSK):c.26T>C (p.Leu9Pro)Likely pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 9
NM_000396.4(CTSK):c.121-1G>APathogenic
not provided|Pyknodysostosis
β˜…β˜…β˜†β˜†2025
NM_000396.4(CTSK):c.679_680insAA (p.Ile227fs)Pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 227
NM_000396.4(CTSK):c.568C>T (p.Gln190Ter)Pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 190
NM_000396.4(CTSK):c.136C>T (p.Arg46Trp)Pathogenic
Pyknodysostosis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 46
View on ClinVar β†—
Drug Targets3
BALICATIBPhase II
Cathepsin K inhibitor
osteoporosis
ODANACATIBPhase III
Cathepsin K inhibitor
osteoporosis
ONO-5334Phase II
Cathepsin K inhibitor
osteoporosis
Related Genes
TNFSF11Protein interaction96%NFATC1Protein interaction95%BCL2Protein interaction95%BCL2L1Protein interaction93%ACP5Protein interaction92%BGLAPProtein interaction92%
Tissue Expression6 tissues
Ovary
100%
Lung
42%
Heart
39%
Bone Marrow
23%
Liver
12%
Brain
6%
Gene Interaction Network
Click a node to explore
CTSKTNFSF11NFATC1BCL2BCL2L1ACP5BGLAP
PROTEIN STRUCTURE
Preparing viewer…
PDB4X6H Β· 1.00 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.75LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF0.50 [0.35–0.75]
RankingsWhere CTSK stands among ~20K protein-coding genes
  • #2,025of 20,598
    Most Researched206 Β· top 10%
  • #580of 5,498
    Most Pathogenic Variants133 Β· top quartile
  • #5,911of 17,882
    Most Constrained (LOEUF)0.75
Genes detectedCTSK
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Cathepsin K (CTSK) in Inflammatory and Immune-Mediated Diseases.
PMID: 41065357
Immunol Invest Β· 2026
1.00
2
Genomic organization and chromosome localization of the human cathepsin K gene (CTSK).
PMID: 9143491
Genomics Β· 1997
0.90
3
Cathepsin K deficiency prevented stress-related thrombosis in a mouse FeCl
PMID: 38703204
Cell Mol Life Sci Β· 2024
0.88
4
Bone-targeting macromolecular therapeutics.
PMID: 15876403
Adv Drug Deliv Rev Β· 2005
0.80
5
Complete genomic structure of the mouse cathepsin K gene (Ctsk) and its localization next to the Arnt gene on mouse chromosome 3.
PMID: 10372556
Matrix Biol Β· 1999
0.76