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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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CYP2A13
cytochrome P450 family 2 subfamily A member 13
Chromosome 19 · 19q13.2
NCBI Gene: 1553Ensembl: ENSG00000197838.6HGNC: HGNC:2608UniProt: Q16696
62PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
heme bindingcoumarin metabolic processcytoplasmxenobiotic metabolic processnasopharyngeal carcinomachronic obstructive pulmonary diseaseneoplasmlung cancer
✦AI Summary

CYP2A13 is a lung-specific cytochrome P450 enzyme that catalyzes the metabolic activation of tobacco-specific carcinogens and environmental toxins. Structurally, CYP2A13 exhibits coumarin 7-hydroxylase activity 1 and possesses broad substrate specificity, metabolizing nicotine, cotinine, 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK), and aflatoxin B1 2. Notably, CYP2A13 catalyzes phenacetin O-deethylation with higher intrinsic clearance than the hepatic CYP1A2 enzyme 3. Mechanistically, CYP2A13 is predominantly expressed in epithelial cells of human bronchi and trachea but rarely in alveolar cells 4, positioning it for localized bioactivation of inhaled carcinogens. In vivo studies demonstrate that CYP2A13 mediates naphthalene-induced respiratory tract toxicity through bioactivation 5. Disease relevance is substantial: CYP2A13-catalyzed metabolic activation of NNK in airways may critically contribute to smoking-related bronchogenic lung cancer development 2. Additionally, CYP2A13 genetic variants encoding inactive enzyme appear protective against pancreatic cancer 6. Clinically, CYP2A13 represents a therapeutic target; flavonoid inhibitors show potent suppression of CYP2A13 activity 7, suggesting potential utility in smoking cessation interventions.

Sources cited
1
CYP2A13 exhibits coumarin 7-hydroxylase activity with variable kinetics depending on substrate structure
PMID: 33703988
2
CYP2A13 is highly efficient in metabolic activation of NNK and AFB1; protein expression is high in bronchial and tracheal epithelial cells
PMID: 16815959
3
CYP2A13 catalyzes phenacetin O-deethylation with higher intrinsic clearance than CYP1A2 and metabolizes theophylline
PMID: 17178771
4
CYP2A13 is differentially distributed in respiratory tract, markedly expressed in tracheal and bronchial epithelial cells but only rarely in alveolar cells
PMID: 22890016
5
CYP2A13 mediates naphthalene bioactivation and plays a significant role in naphthalene-induced respiratory tract toxicity in vivo
PMID: 28599267
6
CYP2A13 variant alleles encoding inactive enzyme are found in controls but not pancreatic cancer patients, suggesting protective effect
PMID: 19812523
7
Flavonoids including kaempferol and myricetin potently inhibit CYP2A13, with potential application in smoking cessation
PMID: 31578905
Disease Associationsⓘ20
nasopharyngeal carcinomaOpen Targets
0.06Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.05Suggestive
neoplasmOpen Targets
0.04Suggestive
lung cancerOpen Targets
0.04Suggestive
response to statinOpen Targets
0.03Suggestive
secondary malignant neoplasmOpen Targets
0.03Suggestive
non-small cell lung carcinomaOpen Targets
0.03Suggestive
lung adenocarcinomaOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
urinary bladder carcinomaOpen Targets
0.02Suggestive
head and neck malignant neoplasiaOpen Targets
0.02Suggestive
Nasal Cavity PolypOpen Targets
0.02Suggestive
colitisOpen Targets
0.01Suggestive
adenocarcinomaOpen Targets
0.01Suggestive
respiratory system diseaseOpen Targets
0.01Suggestive
squamous cell carcinomaOpen Targets
0.01Suggestive
nicotine dependenceOpen Targets
0.01Suggestive
Neoplasm of the lungOpen Targets
0.01Suggestive
pulmonary arterial hypertensionOpen Targets
0.01Suggestive
ovarian cancerOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
UGT1A4Protein interaction98%UGT1A8Protein interaction98%UGT1A6Protein interaction98%UGT1A1Protein interaction97%UGT1A7Protein interaction97%UGT2B7Protein interaction97%
Tissue Expression6 tissues
Liver
100%
Brain
0%
Heart
0%
Lung
0%
Bone Marrow
0%
Ovary
0%
Gene Interaction Network
Click a node to explore
CYP2A13UGT1A4UGT1A8UGT1A6UGT1A1UGT1A7UGT2B7
PROTEIN STRUCTURE
Preparing viewer…
PDB2PG5 · 1.95 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.99LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.73 [0.55–0.99]
RankingsWhere CYP2A13 stands among ~20K protein-coding genes
  • #7,445of 20,598
    Most Researched62
  • #9,504of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedCYP2A13
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Human CYP2A13 and CYP2F1 Mediate Naphthalene Toxicity in the Lung and Nasal Mucosa of CYP2A13/2F1-Humanized Mice.
PMID: 28599267
Environ Health Perspect · 2017
1.00
2
Molecular docking and oxidation kinetics of 3-phenyl coumarin derivatives by human CYP2A13.
PMID: 33703988
Xenobiotica · 2021
0.90
3
The Role of Pharmacogenetics in Smoking.
PMID: 34165800
Clin Pharmacol Ther · 2021
0.80
4
Differential distribution of CYP2A6 and CYP2A13 in the human respiratory tract.
PMID: 22890016
Respiration · 2012
0.70
5
CYP2A13 metabolizes the substrates of human CYP1A2, phenacetin, and theophylline.
PMID: 17178771
Drug Metab Dispos · 2007
0.60