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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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CYS1
cystin 1
Chromosome 2 Β· 2p25.1
NCBI Gene: 192668Ensembl: ENSG00000205795.5HGNC: HGNC:18525UniProt: Q717R9
11PubMed Papers
20Diseases
0Drugs
1Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingcytosolciliumaxonemeatrial fibrillationautosomal recessive polycystic kidney diseaseneurodegenerative diseasepolyarteritis nodosa
✦AI Summary

CYS1 encodes cystin, a 158-amino acid protein localized to primary apical cilia of renal ductal epithelial cells 1. Cystin functions as a regulator of renal epithelial cell differentiation and cystogenesis through interaction with the tumor suppressor necdin, which modulates Myc proto-oncogene expression 2. The protein is expressed in the cytosol and cilium 1 and acts as a transcriptional target of the transcription factor TFAP2B, participating in a renal gene regulatory network alongside PKHD1 3. CYS1 mutations cause autosomal recessive polycystic kidney disease (ARPKD), a monogenically inherited disorder characterized by early-onset cyst development and progressive renal dysfunction 4. CYS1 represents a minor locus for ARPKD, with mutations identified in affected families 4. The cpk mouse model, harboring Cys1 mutations, demonstrates that loss of functional cystin leads to uncontrolled Myc expression, driving excessive renal tubular proliferation and cystic dilatation of distal tubules and collecting ducts 2. A human patient with homozygous CYS1 splicing mutations presented with ARPKD phenotype 2, confirming human disease relevance. Due to phenotypic and genetic overlap among PKD-causing genes, next-generation sequencing panels including CYS1 are recommended for clinical diagnostics 4.

Sources cited
1
CYS1 cDNA cloning, chromosomal location (2p25), protein structure (158 amino acids called cystin), and expression in renal cilia
PMID: 12733055
2
Cystin regulates Myc expression via necdin interaction; CYS1 mutations cause ARPKD phenotype in humans; rescue of cpk kidney phenotype with cystin-GFP transgene
PMID: 34521872
3
TFAP2B transcription factor regulates Cys1 promoter; Cys1 participates in renal epithelial cell gene regulatory network affecting tubular differentiation
PMID: 36710876
4
CYS1 is a minor gene for autosomal recessive polycystic kidney disease; next-generation sequencing panels recommended for PKD genetic testing
PMID: 38097330
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
atrial fibrillationOpen Targets
0.40Weak
autosomal recessive polycystic kidney diseaseOpen Targets
0.35Weak
neurodegenerative diseaseOpen Targets
0.35Weak
polyarteritis nodosaOpen Targets
0.31Weak
goutOpen Targets
0.29Weak
Polycystic Kidney DiseaseOpen Targets
0.23Weak
duodenal ulcerOpen Targets
0.21Weak
polycystic liver disease 3 with or without kidney cystsOpen Targets
0.09Suggestive
polycystic liver disease 4 with or without kidney cystsOpen Targets
0.09Suggestive
Isolated polycystic liver diseaseOpen Targets
0.09Suggestive
renal cysts and diabetes syndromeOpen Targets
0.08Suggestive
Senior-Boichis syndromeOpen Targets
0.08Suggestive
Autosomal dominant polycystic kidney diseaseOpen Targets
0.07Suggestive
polycystic kidney disease 5Open Targets
0.07Suggestive
nephronophthisisOpen Targets
0.07Suggestive
hepatorenocardiac degenerative fibrosisOpen Targets
0.07Suggestive
polycystic kidney disease 3 with or without polycystic liver diseaseOpen Targets
0.07Suggestive
hepatocellular carcinomaOpen Targets
0.06Suggestive
deafnessOpen Targets
0.06Suggestive
familial juvenile hyperuricemic nephropathy type 1Open Targets
0.06Suggestive
Pathogenic Variants1
NM_001037160.3(CYS1):c.318+5G>APathogenic
Autosomal recessive polycystic kidney disease
β˜…β˜†β˜†β˜†2022
View on ClinVar β†—
Related Genes
UNC119BProtein interaction88%PKHD1Protein interaction75%
Tissue Expression6 tissues
Heart
100%
Ovary
88%
Brain
18%
Lung
14%
Liver
13%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
CYS1UNC119BPKHD1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q717R9
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.86LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF1.12 [0.56–1.86]
RankingsWhere CYS1 stands among ~20K protein-coding genes
  • #16,723of 20,598
    Most Researched11
  • #5,469of 5,498
    Most Pathogenic Variants1
  • #16,929of 17,882
    Most Constrained (LOEUF)1.86
Genes detectedCYS1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetic Spectrum of Polycystic Kidney and Liver Diseases and the Resulting Phenotypes.
PMID: 38097330
Adv Kidney Dis Health Β· 2023
1.00
2
Identification of the human CYS1 gene and candidate gene analysis in Boichis disease.
PMID: 12733055
Pediatr Nephrol Β· 2003
0.90
3
Engineering of selective TIMPs.
PMID: 10415716
Ann N Y Acad Sci Β· 1999
0.80
4
Design of potent and selective agonists for the human vasopressin V1b receptor based on modifications of [deamino-cys1]arginine vasopressin at position 4.
PMID: 15084136
J Med Chem Β· 2004
0.70
5
Transcription factor Ap2b regulates the mouse autosomal recessive polycystic kidney disease genes,
PMID: 36710876
Front Mol Biosci Β· 2022
0.60