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GeneE
50 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
DHX9
DExH-box helicase 9
Chromosome 1 Β· 1q25.3
NCBI Gene: 1660Ensembl: ENSG00000135829.18HGNC: HGNC:2750UniProt: B3KU66
550PubMed Papers
21Diseases
0Drugs
17Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTranscription FactorTransporter
RESEARCH IMPACT
Highly StudiedTrending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein localization to cytoplasmic stress granuleRNA polymerase II complex bindingregulatory region RNA bindingmembraneintellectual developmental disorder, autosomal dominant 75neurodegenerative diseasegenetic disorderdengue disease
✦AI Summary

DHX9 (DExH-box helicase 9) is an RNA/DNA helicase with multifaceted roles in nuclear and cytoplasmic processes. Its primary function involves unwinding double-stranded RNA and DNA structures through ATP-dependent hydrolysis 1. Mechanistically, DHX9 contains two N-terminal double-stranded RNA-binding domains and functions in transcription regulation, R-loop metabolism, and RNA processing 12. In R-loop regulation, DHX9 acts bidirectionallyβ€”promoting both formation and resolutionβ€”with SUMOylation at lysine 120 critical for stabilizing protein interactions necessary for R-loop resolution 3. DHX9 regulates circRNA biogenesis through RNA helicase activity and controls miRNA maturation pathways 4. Disease relevance extends beyond its classical viral roles to neurodevelopmental disorders and Charcot-Marie-Tooth disease, with monoallelic variants causing phenotypes ranging from mild developmental delay to polyneuropathy; missense variants affecting the nuclear localization signal cause cytoplasmic accumulation and severe phenotypes, while variants increasing R-loop levels drive genomic instability 5. Clinically, DHX9 emerges as a therapeutic target in cancer: its depletion in small cell lung cancer triggers innate immunity through dsRNA and R-loop accumulation, sensitizing tumors to immunotherapy 6. Similarly, DHX9 inhibition combined with ATR inhibition induces replication stress in ovarian cancer 7. These findings establish DHX9 as a critical genome guardian with broad implications for cancer immunotherapy and neurodevelopmental disease.

Sources cited
1
DHX9 structure (DEIH-box helicase with dsRNA-binding domains, helicase core) and roles in DNA/RNA unwinding, transcription, translation, and genomic stability
PMID: 27034008
2
DHX9 participates in both R-loop formation and resolution as a helicase
PMID: 37778731
3
SUMOylation at K120 is critical for DHX9 function in R-loop resolution and genome stability through regulation of protein interactions
PMID: 39019926
4
DHX9 negatively regulates intergenic circRNA biogenesis and controls miRNA maturation pathways
PMID: 37564198
5
Monoallelic DHX9 variants cause neurodevelopmental disorders and Charcot-Marie-Tooth disease; NLS missense variants cause cytoplasmic accumulation and severe phenotypes; variants increase R-loop levels and DNA breaks
PMID: 37467750
6
DHX9 depletion in small cell lung cancer triggers dsRNA and R-loop accumulation, inducing innate immune responses and replication stress, enhancing immunotherapy responsiveness
PMID: 38189443
7
AKT1 interacts with DHX9 to facilitate R-loop resolution; DHX9/AKT1 inhibition induces replication stress in ovarian cancer
PMID: 38241710
Disease Associationsβ“˜21
intellectual developmental disorder, autosomal dominant 75Open Targets
0.62Moderate
neurodegenerative diseaseOpen Targets
0.55Moderate
genetic disorderOpen Targets
0.52Moderate
dengue diseaseOpen Targets
0.37Weak
lysosomal storage diseaseOpen Targets
0.31Weak
Charcot-Marie-Tooth diseaseOpen Targets
0.27Weak
cardiomyopathyOpen Targets
0.27Weak
hepatocellular carcinomaOpen Targets
0.24Weak
cancerOpen Targets
0.11Weak
neoplasmOpen Targets
0.10Weak
breast cancerOpen Targets
0.10Weak
systemic lupus erythematosusOpen Targets
0.08Suggestive
gliomaOpen Targets
0.08Suggestive
acute myeloid leukemiaOpen Targets
0.08Suggestive
Ewing sarcomaOpen Targets
0.08Suggestive
viral diseaseOpen Targets
0.08Suggestive
colorectal cancerOpen Targets
0.08Suggestive
osteosarcomaOpen Targets
0.08Suggestive
small cell lung carcinomaOpen Targets
0.08Suggestive
pachyonychia congenitaOpen Targets
0.07Suggestive
Intellectual developmental disorder, autosomal dominant 75UniProt
Pathogenic Variants17
NM_001357.5(DHX9):c.2299C>T (p.Arg767Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 767
NM_001357.5(DHX9):c.422G>A (p.Arg141Gln)Likely pathogenic
Intellectual developmental disorder, autosomal dominant 75|not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 141
NM_001357.5(DHX9):c.1133del (p.Leu378fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 378
NM_001357.5(DHX9):c.1704C>A (p.Tyr568Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2024β†’ Residue 568
NM_001357.5(DHX9):c.3745C>T (p.Arg1249Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 1249
NM_001357.5(DHX9):c.3154C>T (p.Arg1052Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2024β†’ Residue 1052
NM_001357.5(DHX9):c.2290C>T (p.Arg764Ter)Pathogenic
Inborn genetic diseases|Thyroid cancer, nonmedullary, 1
β˜…β˜†β˜†β˜†2024β†’ Residue 764
NM_001357.5(DHX9):c.1876C>T (p.Gln626Ter)Pathogenic
DHX9-associated neurodevelopmental disorder
β˜…β˜†β˜†β˜†2024β†’ Residue 626
NM_001357.5(DHX9):c.3384dup (p.Glu1129Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2024β†’ Residue 1129
NM_001357.5(DHX9):c.1557+1G>APathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_001357.5(DHX9):c.1420C>T (p.Arg474Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 474
NM_001357.5(DHX9):c.2282G>A (p.Arg761Gln)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 761
NM_001357.5(DHX9):c.710dup (p.Leu237fs)Likely pathogenic
Charcot-Marie-Tooth disease
β˜…β˜†β˜†β˜†2023β†’ Residue 237
NM_001357.5(DHX9):c.2291G>A (p.Arg764Gln)Likely pathogenic
DHX9-related neurodevelopmental disorder
β˜…β˜†β˜†β˜†2023β†’ Residue 764
NM_001357.5(DHX9):c.1240G>A (p.Gly414Arg)Pathogenic
DHX9-related disorder|Intellectual developmental disorder, autosomal dominant 75
β˜†β˜†β˜†β˜†2024β†’ Residue 414
NM_001357.5(DHX9):c.685C>T (p.Arg229Ter)Pathogenic
Intellectual developmental disorder, autosomal dominant 75
β˜†β˜†β˜†β˜†2024β†’ Residue 229
NM_001357.5(DHX9):c.3497G>C (p.Arg1166Pro)Pathogenic
Intellectual developmental disorder, autosomal dominant 75
β˜†β˜†β˜†β˜†2024β†’ Residue 1166
View on ClinVar β†—
Related Genes
ADARProtein interaction100%DDX3XProtein interaction100%DDX5Protein interaction100%DDX6Protein interaction100%DICER1Protein interaction100%TNRC6AProtein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
52%
Ovary
33%
Lung
29%
Heart
27%
Liver
17%
Gene Interaction Network
Click a node to explore
DHX9ADARDDX3XDDX5DDX6DICER1TNRC6A
PROTEIN STRUCTURE
Preparing viewer…
PDB3VYX Β· 2.29 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.26Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.19 [0.14–0.26]
RankingsWhere DHX9 stands among ~20K protein-coding genes
  • #449of 20,598
    Most Researched550 Β· top 5%
  • #2,307of 5,498
    Most Pathogenic Variants17
  • #858of 17,882
    Most Constrained (LOEUF)0.26 Β· top 5%
Genes detectedDHX9
Sources retrieved50 papers
Response timeβ€”
πŸ“„ Sources
50β–Ό
1
RNA damage compartmentalization by DHX9 stress granules.
PMID: 38503283
Cell Β· 2024
1.00
2
Targeting DHX9 Triggers Tumor-Intrinsic Interferon Response and Replication Stress in Small Cell Lung Cancer.
PMID: 38189443
Cancer Discov Β· 2024
0.90
3
ADAR1 links R-loop homeostasis to ATR activation in replication stress response.
PMID: 37831098
Nucleic Acids Res Β· 2023
0.86
4
Monoallelic variation in DHX9, the gene encoding the DExH-box helicase DHX9, underlies neurodevelopment disorders and Charcot-Marie-Tooth disease.
PMID: 37467750
Am J Hum Genet Β· 2023
0.80
5
Proteomic dissection of large extracellular vesicle surfaceome unravels interactive surface platform.
PMID: 34817906
J Extracell Vesicles Β· 2021
0.80