HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
DPYD
dihydropyrimidine dehydrogenase
Chromosome 1 Β· 1p21.3
NCBI Gene: 1806Ensembl: ENSG00000188641.15HGNC: HGNC:3012UniProt: Q12882
269PubMed Papers
21Diseases
2Drugs
146Pathogenic Variants
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
thymidine catabolic processTMP catabolic processxenobiotic catabolic processcytosoldihydropyrimidine dehydrogenase deficiencygastric cancerstomach neoplasmWheezing
✦AI Summary

DPYD encodes dihydropyrimidine dehydrogenase (DPD), the rate-limiting enzyme responsible for catabolism of pyrimidine bases and fluoropyrimidine chemotherapy drugs 1. DPD catalyzes the reduction of uracil and thymine and is involved in degradation of the chemotherapeutic drug 5-fluorouracil 2. The enzyme functions as a homodimer and requires NADP+ and FAD as cofactors for its catalytic activity. Genetic variants in DPYD significantly impact DPD enzyme activity, with four clinically relevant variants (DPYD*2A, c.2846A>T, c.1679T>G, and c.1236G>A) used to calculate a gene activity score ranging from 0 (no activity) to 2 (normal activity) 1. DPD deficiency due to DPYD variants increases risk of severe, potentially fatal fluoropyrimidine-induced toxicity including diarrhea, hand-foot syndrome, mucositis, and myelosuppression 1. Prospective DPYD genotyping allows for personalized fluoropyrimidine dosing, with heterozygous carriers receiving 25-50% dose reductions depending on the variant 3. This genotype-guided approach significantly improves patient safety while maintaining treatment efficacy, with pooled survival analyses showing no negative impact on progression-free or overall survival 4. DPYD genotyping is now considered essential before initiating fluoropyrimidine therapy 1.

Sources cited
1
DPYD encodes DPD as rate-limiting enzyme for fluoropyrimidine metabolism and supports gene activity scoring system
PMID: 31745289
2
DPD catalyzes reduction of uracil/thymine and degrades 5-fluorouracil
PMID: 1512248
3
Prospective genotyping with dose reductions improves patient safety
PMID: 30348537
4
DPYD-guided dosing maintains treatment efficacy without affecting survival outcomes
PMID: 37639651
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
dihydropyrimidine dehydrogenase deficiencyOpen Targets
0.82Strong
gastric cancerOpen Targets
0.54Moderate
stomach neoplasmOpen Targets
0.50Moderate
WheezingOpen Targets
0.47Moderate
schizophreniaOpen Targets
0.47Moderate
Knee painOpen Targets
0.47Moderate
genetic disorderOpen Targets
0.45Moderate
head and neck malignant neoplasiaOpen Targets
0.45Moderate
gastroesophageal reflux diseaseOpen Targets
0.45Moderate
mathematical abilityOpen Targets
0.43Moderate
intelligenceOpen Targets
0.43Moderate
Abnormality of the skeletal systemOpen Targets
0.42Moderate
non-small cell lung carcinomaOpen Targets
0.41Moderate
osteoarthritisOpen Targets
0.40Moderate
smoking initiationOpen Targets
0.39Weak
peptic ulcer diseaseOpen Targets
0.38Weak
Abnormality of limbsOpen Targets
0.36Weak
autism spectrum disorderOpen Targets
0.35Weak
smoking cessationOpen Targets
0.35Weak
gastric adenocarcinomaOpen Targets
0.35Weak
Dihydropyrimidine dehydrogenase deficiencyUniProt
Pathogenic Variants146
NM_000110.4(DPYD):c.257C>T (p.Pro86Leu)Pathogenic
Dihydropyrimidine dehydrogenase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 86
NM_000110.4(DPYD):c.2579del (p.Gln860fs)Pathogenic
Dihydropyrimidine dehydrogenase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 860
NM_000110.4(DPYD):c.1475C>T (p.Ser492Leu)Pathogenic
Dihydropyrimidine dehydrogenase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 492
NM_000110.4(DPYD):c.601A>C (p.Ser201Arg)Likely pathogenic
Dihydropyrimidine dehydrogenase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 201
NM_000110.4(DPYD):c.299_302del (p.Phe100fs)Pathogenic
Dihydropyrimidine dehydrogenase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 100
NM_000110.4(DPYD):c.205G>T (p.Glu69Ter)Pathogenic
Dihydropyrimidine dehydrogenase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 69
NM_000110.4(DPYD):c.61C>T (p.Arg21Ter)Pathogenic
Dihydropyrimidine dehydrogenase deficiency|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 21
NM_000110.4(DPYD):c.1408C>T (p.Gln470Ter)Likely pathogenic
DPYD-related disorder|Dihydropyrimidine dehydrogenase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 470
NM_000110.4(DPYD):c.2043_2058del (p.Leu682fs)Likely pathogenic
Dihydropyrimidine dehydrogenase deficiency|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 682
NM_000110.4(DPYD):c.1155_1156del (p.Cys385_Glu386delinsTer)Likely pathogenic
Dihydropyrimidine dehydrogenase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 385
NM_000110.4(DPYD):c.1379dup (p.Leu461fs)Pathogenic
Dihydropyrimidine dehydrogenase deficiency|Neurodevelopmental delay
β˜…β˜…β˜†β˜†2024β†’ Residue 461
NM_000110.4(DPYD):c.1340-2A>CLikely pathogenic
Dihydropyrimidine dehydrogenase deficiency|DPYD-related disorder
β˜…β˜…β˜†β˜†2024
NM_000110.4(DPYD):c.661G>T (p.Glu221Ter)Pathogenic
Dihydropyrimidine dehydrogenase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 221
NM_000110.4(DPYD):c.2746del (p.Arg916fs)Likely pathogenic
Dihydropyrimidine dehydrogenase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 916
NM_000110.4(DPYD):c.127_134del (p.Lys42_Arg43insTer)Pathogenic
Dihydropyrimidine dehydrogenase deficiency|not provided|See cases
β˜…β˜…β˜†β˜†2024β†’ Residue 42
NM_000110.4(DPYD):c.1681C>T (p.Arg561Ter)Pathogenic
Dihydropyrimidine dehydrogenase deficiency|DPYD-related disorder|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 561
NM_000110.4(DPYD):c.1977_1983delLikely pathogenic
Dihydropyrimidine dehydrogenase deficiency
β˜…β˜…β˜†β˜†2023
NM_000110.4(DPYD):c.1905+1G>CPathogenic
Dihydropyrimidine dehydrogenase deficiency|not provided
β˜…β˜…β˜†β˜†2023
NM_000110.4(DPYD):c.2275C>T (p.Arg759Ter)Pathogenic
Dihydropyrimidine dehydrogenase deficiency|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 759
NM_000110.4(DPYD):c.208C>T (p.Arg70Ter)Pathogenic
Dihydropyrimidine dehydrogenase deficiency
β˜…β˜…β˜†β˜†2023β†’ Residue 70
View on ClinVar β†—
Drug Targets2
ENILURACILPhase II
Dihydropyrimidine dehydrogenase inhibitor
familial hyperlipidemia
GIMERACILApproved
Dihydropyrimidine dehydrogenase inhibitor
gastric cancer
Related Genes
CADProtein interaction100%CPS1Protein interaction100%CRMP1Protein interaction100%CYP2A6Protein interaction100%CYB5R3Protein interaction100%MTHFRProtein interaction99%
Tissue Expression6 tissues
Lung
100%
Liver
93%
Ovary
52%
Heart
31%
Bone Marrow
27%
Brain
17%
Gene Interaction Network
Click a node to explore
DPYDCADCPS1CRMP1CYP2A6CYB5R3MTHFR
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q12882
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.09LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.92 [0.78–1.09]
RankingsWhere DPYD stands among ~20K protein-coding genes
  • #1,372of 20,598
    Most Researched269 Β· top 10%
  • #810of 1,025
    FDA-Approved Drug Targets1
  • #519of 5,498
    Most Pathogenic Variants146 Β· top 10%
  • #11,096of 17,882
    Most Constrained (LOEUF)1.09
Genes detectedDPYD
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Dutch Pharmacogenetics Working Group (DPWG) guideline for the gene-drug interaction of DPYD and fluoropyrimidines.
PMID: 31745289
Eur J Hum Genet Β· 2020
1.00
2
Updated DPYD HapB3 haplotype structure and implications for pharmacogenomic testing.
PMID: 38129972
Clin Transl Sci Β· 2024
0.90
3
Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for Dihydropyrimidine Dehydrogenase Genotype and Fluoropyrimidine Dosing: 2017 Update.
PMID: 29152729
Clin Pharmacol Ther Β· 2018
0.80
4
DPYD genotype-guided dose individualisation of fluoropyrimidine therapy in patients with cancer: a prospective safety analysis.
PMID: 30348537
Lancet Oncol Β· 2018
0.70
5
Frequency of DPYD gene variants and phenotype inference in a Southern Brazilian population.
PMID: 34897655
Ann Hum Genet Β· 2022
0.64