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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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DYNC2I1
dynein 2 intermediate chain 1
Chromosome 7 Β· 7q36.3
NCBI Gene: 55112Ensembl: ENSG00000126870.17HGNC: HGNC:21862UniProt: A0A140VK66
50PubMed Papers
21Diseases
0Drugs
31Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
spindle polecentrosomeinterphase microtubule organizing centerciliary baseShort rib-polydactyly syndrome, Verma-Naumoff typeJeune syndromeasphyxiating thoracic dystrophy 3short rib-polydactyly syndrome, Majewski type
✦AI Summary

DYNC2I1 encodes dynein 2 intermediate chain 1, a non-catalytic accessory component of the cytoplasmic dynein 2 complex that drives retrograde intraflagellar transport (IFT) in cilia and flagella 1. The protein plays a major role in retrograde ciliary protein trafficking and is required to maintain a functional transition zone 2. DYNC2I1 localizes to ciliary structures and functions as part of the dynein-2 motor complex that transports cargo along microtubules within cilia in concert with the IFT system. Mechanistically, pathogenic variants of DYNC2I1 demonstrate compromised ability to interact with other dynein-2 subunits like DYNC2H1 and WDR60, leading to ciliary defects 3. Disease relevance includes associations with short-rib thoracic dysplasia, a lethal skeletal ciliopathy characterized by shortened ribs, polydactyly, and extraskeletal phenotypes. Compound heterozygous mutations combining deletion and missense variants cause more severe ciliary dysfunction than individual variants alone 3. Clinical significance extends beyond skeletal ciliopathies, as bi-allelic DYNC2I1 variants (one germline, one somatic) have been identified in hypothalamic hamartomas, reconceptualizing this disorder as a ciliopathy 4. The gene also shows population-specific variation in repeat composition that may contribute to genomic diversity 5.

Sources cited
1
DYNC2I1 is a non-catalytic accessory component of the cytoplasmic dynein 2 complex involved in intraflagellar transport
PMID: 23910462
2
DYNC2I1 plays a major role in retrograde ciliary protein trafficking and maintaining functional transition zones
PMID: 25830415
3
Pathogenic DYNC2I1 variants show compromised interaction with dynein-2 subunits and cause ciliary defects, especially in compound heterozygous combinations
PMID: 34997029
4
Bi-allelic DYNC2I1 variants are found in hypothalamic hamartomas, identifying it as a ciliopathy
PMID: 35137044
5
DYNC2I1 shows population-specific variation in repeat composition contributing to genomic diversity
PMID: 34244228
Disease Associationsβ“˜21
Short rib-polydactyly syndrome, Verma-Naumoff typeOpen Targets
0.76Strong
Jeune syndromeOpen Targets
0.51Moderate
asphyxiating thoracic dystrophy 3Open Targets
0.47Moderate
short rib-polydactyly syndrome, Majewski typeOpen Targets
0.47Moderate
cystic kidney diseaseOpen Targets
0.34Weak
inappropriate ADH syndromeOpen Targets
0.33Weak
COVID-19Open Targets
0.28Weak
generalized dystoniaOpen Targets
0.28Weak
genetic disorderOpen Targets
0.19Weak
jaw diseaseOpen Targets
0.15Weak
adolescent idiopathic scoliosisOpen Targets
0.12Weak
pulmonary vascular congestionOpen Targets
0.08Suggestive
placenta praeviaOpen Targets
0.07Suggestive
gastric cancerOpen Targets
0.05Suggestive
gastric carcinomaOpen Targets
0.05Suggestive
gastric adenocarcinoma and proximal polyposis of the stomachOpen Targets
0.04Suggestive
visceral myopathy 2Open Targets
0.04Suggestive
chronic intestinal pseudoobstructionOpen Targets
0.04Suggestive
HydrolethalusOpen Targets
0.03Suggestive
hydrolethalus syndrome 2Open Targets
0.03Suggestive
Short-rib thoracic dysplasia 8 with or without polydactylyUniProt
Pathogenic Variants31
NM_018051.5(DYNC2I1):c.2284C>T (p.Arg762Ter)Pathogenic
Asphyxiating thoracic dystrophy 3|Short-rib thoracic dysplasia 8 with or without polydactyly|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 762
NM_018051.5(DYNC2I1):c.1321C>T (p.Arg441Ter)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜…β˜†β˜†2023β†’ Residue 441
NM_018051.5(DYNC2I1):c.935+1G>CLikely pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2025
NM_018051.5(DYNC2I1):c.1703-1G>ALikely pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2025
NM_018051.5(DYNC2I1):c.490+1G>ALikely pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2025
NM_018051.5(DYNC2I1):c.1580dup (p.Asn527fs)Pathogenic
Cystic renal disease
β˜…β˜†β˜†β˜†2025β†’ Residue 527
NM_018051.5(DYNC2I1):c.1647dup (p.Glu550fs)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 550
NM_018051.5(DYNC2I1):c.671del (p.Asp224fs)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 224
NM_018051.5(DYNC2I1):c.2651_2652dup (p.Ile885fs)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 885
NM_018051.5(DYNC2I1):c.1566_1578del (p.Asn522fs)Likely pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2025β†’ Residue 522
NM_018051.5(DYNC2I1):c.778C>T (p.Arg260Ter)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2024β†’ Residue 260
NM_018051.5(DYNC2I1):c.2378dup (p.Gly794fs)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2024β†’ Residue 794
NM_018051.5(DYNC2I1):c.2246C>T (p.Thr749Met)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2023β†’ Residue 749
NM_018051.5(DYNC2I1):c.553del (p.Arg185fs)Likely pathogenic
DYNC2I1-related disorder
β˜…β˜†β˜†β˜†2023β†’ Residue 185
NM_018051.5(DYNC2I1):c.378_381del (p.Asp126fs)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2023β†’ Residue 126
NM_018051.5(DYNC2I1):c.1358-2A>GLikely pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2023
NM_018051.5(DYNC2I1):c.898C>T (p.Arg300Ter)Likely pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2023β†’ Residue 300
NM_018051.5(DYNC2I1):c.527_528del (p.Asp175_Ser176insTer)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2022β†’ Residue 175
NM_018051.5(DYNC2I1):c.712_715del (p.Glu238fs)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2022β†’ Residue 238
NM_018051.5(DYNC2I1):c.562C>T (p.Arg188Ter)Pathogenic
Short-rib thoracic dysplasia 8 with or without polydactyly
β˜…β˜†β˜†β˜†2022β†’ Residue 188
View on ClinVar β†—
Related Genes
WDR19Protein interaction100%IFT140Protein interaction100%DYNLL2Protein interaction97%DYNC1LI1Protein interaction93%DYNLT3Protein interaction90%DYNC2LI1Protein interaction90%
Tissue Expression6 tissues
Heart
100%
Ovary
61%
Lung
48%
Bone Marrow
36%
Brain
32%
Liver
29%
Gene Interaction Network
Click a node to explore
DYNC2I1WDR19IFT140DYNLL2DYNC1LI1DYNLT3DYNC2LI1
PROTEIN STRUCTURE
Preparing viewer…
PDB6SC2 Β· 3.90 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.80LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.66 [0.55–0.80]
RankingsWhere DYNC2I1 stands among ~20K protein-coding genes
  • #8,797of 20,598
    Most Researched50
  • #1,784of 5,498
    Most Pathogenic Variants31
  • #6,681of 17,882
    Most Constrained (LOEUF)0.80
Genes detectedDYNC2I1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Sporadic hypothalamic hamartoma is a ciliopathy with somatic and bi-allelic contributions.
PMID: 35137044
Hum Mol Genet Β· 2022
1.00
2
Characterizing nucleotide variation and expansion dynamics in human-specific variable number tandem repeats.
PMID: 34244228
Genome Res Β· 2021
0.90
3
Genome-wide association study identifies 7q11.22 and 7q36.3 associated with noise-induced hearing loss among Chinese population.
PMID: 33242228
J Cell Mol Med Β· 2021
0.80
4
Tctex1d2 associates with short-rib polydactyly syndrome proteins and is required for ciliogenesis.
PMID: 25830415
Cell Cycle Β· 2015
0.70
5
SRPS associated protein WDR60 regulates the multipolar-to-bipolar transition of migrating neurons during cortical development.
PMID: 33436552
Cell Death Dis Β· 2021
0.60