HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
EDN3
endothelin 3
Chromosome 20 Β· 20q13.32
NCBI Gene: 1908Ensembl: ENSG00000124205.18HGNC: HGNC:3178UniProt: P14138
82PubMed Papers
22Diseases
0Drugs
7Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
artery smooth muscle contractionpositive regulation of cell population proliferationregulation of gene expressionpositive regulation of cell differentiationWaardenburg syndrome type 4BHirschsprung diseaseWaardenburg-Shah syndromeWaardenburg syndrome
✦AI Summary

EDN3 (endothelin 3) is a vasoconstrictor peptide located on chromosome 20.2-q13.3 1 that functions as a key regulator in multiple physiological systems. Mechanistically, EDN3 signals through endothelin receptor type B (EDNRB) via cAMP-EPAC1-ERK activation pathways 2, modulating vascular tone, smooth muscle contraction, and systemic blood pressure regulation 3. Beyond cardiovascular function, EDN3 preserves Ξ² cell identity and metabolic function under hypoxic conditions by regulating genes involved in glucose sensing and Ξ² cell maturation 4, and promotes thermogenic differentiation of white adipose tissue, with EDNRB deletion impairing cold-induced browning and causing metabolic dysfunction 2. Clinically, EDN3 mutations are associated with Waardenburg syndrome 4B and Hirschsprung disease 4 56. These conditions reflect EDN3's critical role in neural crest cell migration and development. Additionally, EDN3 expression correlates with lung adenocarcinoma patient survival and serves as a potential prognostic biomarker 7. The gene's pleiotropic effects across vascular, metabolic, and developmental systems underscore its importance in normal physiology and disease pathogenesis, with emerging therapeutic potential in metabolic disorders, diabetes, and cancer.

Sources cited
1
EDN3 chromosomal location at 20q13.2-q13.3
PMID: 2018043
2
EDN3/EDNRB signaling mechanism via cAMP-EPAC1-ERK and role in adipose tissue browning and metabolic regulation
PMID: 39174539
3
EDN3 involvement in blood pressure regulation identified through genome-wide association study
PMID: 21909115
4
EDN3 preserves Ξ² cell identity and metabolic function under hypoxia
PMID: 40404627
5
EDN3 mutations cause Waardenburg syndrome 4B with pigmentation and hearing loss phenotypes
PMID: 20127975
6
EDN3 mutations associated with Hirschsprung disease and its complex polygenic inheritance
PMID: 11106284
7
EDN3 expression as prognostic biomarker in lung adenocarcinoma
PMID: 40696931
Disease Associationsβ“˜22
Waardenburg syndrome type 4BOpen Targets
0.75Strong
Hirschsprung diseaseOpen Targets
0.61Moderate
Waardenburg-Shah syndromeOpen Targets
0.56Moderate
Waardenburg syndromeOpen Targets
0.51Moderate
Ondine syndromeOpen Targets
0.44Moderate
hair colorOpen Targets
0.44Moderate
central hypoventilation syndrome, congenitalOpen Targets
0.42Moderate
central hypoventilation syndrome, congenital, 1, with or without Hirschsprung diseaseOpen Targets
0.42Moderate
inflammatory bowel diseaseOpen Targets
0.37Weak
punctate palmoplantar keratoderma type IIIOpen Targets
0.37Weak
Aganglionic megacolonOpen Targets
0.29Weak
Sensorineural hearing impairmentOpen Targets
0.27Weak
sensorineural hearing lossOpen Targets
0.27Weak
musculoskeletal system diseaseOpen Targets
0.22Weak
genetic disorderOpen Targets
0.19Weak
neuroendocrine neoplasmOpen Targets
0.18Weak
response to antihypertensive drugOpen Targets
0.17Weak
intestinal diseaseOpen Targets
0.15Weak
Abnormal rectum morphologyOpen Targets
0.12Weak
placenta praeviaOpen Targets
0.11Weak
Hirschsprung disease 4UniProt
Waardenburg syndrome 4BUniProt
Pathogenic Variants7
NM_207034.3(EDN3):c.293C>T (p.Thr98Met)Likely pathogenic
Sensorineural hearing loss disorder
β˜…β˜†β˜†β˜†2020β†’ Residue 98
NM_207034.3(EDN3):c.334C>A (p.His112Asn)Likely pathogenic
Waardenburg syndrome type 4B
β˜…β˜†β˜†β˜†2016β†’ Residue 112
NM_207034.3(EDN3):c.277C>G (p.Arg93Gly)Pathogenic
Waardenburg syndrome type 4B
β˜†β˜†β˜†β˜†2010β†’ Residue 93
NM_207034.3(EDN3):c.335A>G (p.His112Arg)Pathogenic
Waardenburg syndrome type 4B
β˜†β˜†β˜†β˜†2009β†’ Residue 112
NM_207034.3(EDN3):c.507C>A (p.Cys169Ter)Pathogenic
Waardenburg syndrome type 4B
β˜†β˜†β˜†β˜†2001β†’ Residue 169
NM_207034.3(EDN3):c.476G>T (p.Cys159Phe)Pathogenic
Waardenburg syndrome type 4B
β˜†β˜†β˜†β˜†1996β†’ Residue 159
NM_207034.3(EDN3):c.262_263delinsT (p.Ala88fs)Pathogenic
Waardenburg syndrome type 4B
β˜†β˜†β˜†β˜†1996β†’ Residue 88
View on ClinVar β†—
Related Genes
ECE1Protein interaction100%EEF1AKMT4-ECE2Protein interaction100%KELProtein interaction95%ECE2Protein interaction87%DRD2Protein interaction80%EDN2Protein interaction79%
Tissue Expression6 tissues
Brain
100%
Ovary
41%
Lung
14%
Bone Marrow
6%
Liver
5%
Heart
3%
Gene Interaction Network
Click a node to explore
EDN3ECE1EEF1AKMT4-ECE2KELECE2DRD2EDN2
PROTEIN STRUCTURE
Preparing viewer…
PDB6IGK Β· 2.00 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.70LoF Tolerant
pLIβ“˜
0.38Tolerant
Observed/Expected LoF0.40 [0.24–0.70]
RankingsWhere EDN3 stands among ~20K protein-coding genes
  • #5,786of 20,598
    Most Researched82
  • #3,193of 5,498
    Most Pathogenic Variants7
  • #5,277of 17,882
    Most Constrained (LOEUF)0.70
Genes detectedEDN3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Review and update of mutations causing Waardenburg syndrome.
PMID: 20127975
Hum Mutat Β· 2010
1.00
2
Improving cellular fitness of human stem cell-derived islets under hypoxia.
PMID: 40404627
Nat Commun Β· 2025
0.90
3
Stemness-associated WNT3A and EDN3 as key regulators of tumor progression and immunotherapy efficacy in LUAD.
PMID: 40696931
Int J Surg Β· 2025
0.80
4
Endothelin 3/EDNRB signaling induces thermogenic differentiation of white adipose tissue.
PMID: 39174539
Nat Commun Β· 2024
0.70
5
Chromosomal assignments of the human endothelin family genes: the endothelin-1 gene (EDN1) to 6p23-p24, the endothelin-2 gene (EDN2) to 1p34, and the endothelin-3 gene (EDN3) to 20q13.2-q13.3.
PMID: 2018043
Am J Hum Genet Β· 1991
0.60