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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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EMCN
endomucin
Chromosome 4 · 4q24
NCBI Gene: 51705Ensembl: ENSG00000164035.11HGNC: HGNC:16041UniProt: Q4W5J1
25PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Swiss-Prot Reviewed
extracellular regionplasma membranemembraneopen-angle glaucomainsomniaAbnormality of the skeletal systemCOVID-19
✦AI Summary

EMCN (endomucin) is an endothelial sialomucin expressed on specialized bone vessels that plays a critical role in coupling angiogenesis with osteogenesis. EMCN is a marker of type H vessels (CD31hiEMCNhi), a vessel subtype identified by high co-expression of CD31 and endomucin 1. These type H vessels possess the intrinsic ability to induce bone formation and are essential for skeletal homeostasis 1. Mechanistically, EMCN expression is regulated by multiple signaling pathways including SLIT3 secreted by osteoblasts 2, PDGF-BB from preosteoclasts 3, and miR-497~195 cluster in endothelial cells 4. EMCN also participates in HIF-1α and Notch signaling to maintain endothelial function 45. In inflammatory conditions, EMCN upregulation prevents lymphocyte recruitment 5. Clinically, EMCN is relevant to bone pathologies including osteoporosis, fracture healing, and periodontitis. Reduced CD31hiEMCNhi vessel abundance correlates with age-related bone loss 4. Therapeutic strategies targeting SLIT3, PDGF-BB, or miR-195 pathways to enhance EMCN+ type H vessel formation show promise for treating osteoporosis, fracture healing defects, and periodontal disease 245.

Sources cited
1
Type H vessels characterized by high EMCN and CD31 expression have the ability to induce bone formation
PMID: 31903130
2
SLIT3 is an osteoblast-derived proangiogenic factor that regulates CD31hiEMCNhi endothelium; SLIT3 administration enhances bone fracture healing and counteracts osteoporosis
PMID: 29785024
3
PDGF-BB secreted by preosteoclasts induces CD31(hi)Emcn(hi) vessel formation; exogenous PDGF-BB increases vessel number and stimulates bone formation in osteoporotic mice
PMID: 25282358
4
miR-497~195 cluster expression is high in CD31hiEmcnhi endothelium and maintains endothelial Notch and HIF-1α activity; endothelium-specific activation of miR-195 stimulates bone formation in aged mice
PMID: 28685750
5
EMCN upregulation in endothelial cells prevents lymphocyte recruitment and mediates anti-inflammatory effects relevant to periodontitis treatment
PMID: 39587694
Disease Associationsⓘ20
open-angle glaucomaOpen Targets
0.42Moderate
insomniaOpen Targets
0.34Weak
Abnormality of the skeletal systemOpen Targets
0.27Weak
COVID-19Open Targets
0.25Weak
smoking initiationOpen Targets
0.22Weak
pathological myopiaOpen Targets
0.19Weak
nicotine dependenceOpen Targets
0.17Weak
viral eye infectionOpen Targets
0.17Weak
neoplasmOpen Targets
0.09Suggestive
frozen shoulderOpen Targets
0.09Suggestive
iron metabolism diseaseOpen Targets
0.09Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
gastric cancerOpen Targets
0.07Suggestive
Hemoglobin E - beta-thalassemiaOpen Targets
0.06Suggestive
hemoglobin E-beta-thalassemia syndromeOpen Targets
0.06Suggestive
autosomal dominant macrothrombocytopeniaOpen Targets
0.05Suggestive
Beta-thalassemia - X-linked thrombocytopeniaOpen Targets
0.05Suggestive
beta-thalassemia-X-linked thrombocytopenia syndromeOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
OSGEPProtein interaction93%MUC1Protein interaction79%ADGRL4Protein interaction78%SELLProtein interaction76%TEKProtein interaction75%PECAM1Protein interaction75%
Tissue Expression6 tissues
Heart
100%
Lung
31%
Ovary
9%
Liver
4%
Brain
4%
Bone Marrow
1%
Gene Interaction Network
Click a node to explore
EMCNOSGEPMUC1ADGRL4SELLTEKPECAM1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q4W5J1
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.35LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.89 [0.60–1.35]
RankingsWhere EMCN stands among ~20K protein-coding genes
  • #12,972of 20,598
    Most Researched25
  • #14,166of 17,882
    Most Constrained (LOEUF)1.35
Genes detectedEMCN
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Type H blood vessels in bone modeling and remodeling.
PMID: 31903130
Theranostics · 2020
1.00
2
Targeting skeletal endothelium to ameliorate bone loss.
PMID: 29785024
Nat Med · 2018
0.90
3
PDGF-BB secreted by preosteoclasts induces angiogenesis during coupling with osteogenesis.
PMID: 25282358
Nat Med · 2014
0.80
4
EGFL6 regulates angiogenesis and osteogenesis in distraction osteogenesis via Wnt/β-catenin signaling.
PMID: 34294121
Stem Cell Res Ther · 2021
0.70
5
A new paradigm in bone tissue biomaterials: Enhanced osteogenesis-angiogenic coupling by targeting H-type blood vessels.
PMID: 40513476
Biomaterials · 2026
0.60