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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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EPHB6
EPH receptor B6
Chromosome 7 · 7q34
NCBI Gene: 2051Ensembl: ENSG00000106123.13HGNC: HGNC:3396UniProt: A0A0G2JNH7
85PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Receptor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
ATP bindingSH2 domain bindingprotein kinase activityprotein binding
✦AI Summary

EPHB6 encodes a kinase-defective receptor tyrosine kinase that functions as a molecular switch in signal transduction pathways 1. Unlike conventional Eph receptors, EPHB6 lacks kinase activity but acts as a scaffold protein that modulates Eph receptor cluster signaling by recruiting adaptor proteins 1. EPHB6 demonstrates significant tumor suppressor activity across multiple cancer types. In neuroblastoma, high EPHB6 expression is associated with favorable patient outcomes and low tumor stages, with transfection studies showing direct inhibition of cell clonogenicity and tumorigenicity 2. In breast cancer, EPHB6 loss correlates with invasive phenotypes, and restoration reduces invasiveness by modulating matrix metalloproteinase expression 3. Similarly, in colorectal cancer, EPHB6 loss promotes metastatic spread, with significantly lower expression observed in lymph node metastases compared to primary tumors 4. EPHB6 also regulates neuronal function and gut-brain axis communication, with deficiency causing autism-like behaviors through disrupted gut microbiota and vitamin B6/dopamine metabolism 5. The receptor's unique structural organization allows it to function through ligand-binding domain interactions and requires co-receptors for signaling due to its kinase-inactive nature 6.

Sources cited
1
EPHB6 is a kinase-defective receptor that functions as a molecular switch and scaffold protein
PMID: 34360976
2
High EPHB6 expression predicts favorable neuroblastoma outcomes and inhibits tumorigenicity
PMID: 10984508
3
EPHB6 loss correlates with breast cancer invasiveness and affects matrix metalloproteinase expression
PMID: 19234485
4
EPHB6 loss promotes colorectal cancer metastasis with lower expression in metastases versus primary tumors
PMID: 28262839
5
EPHB6 deficiency causes autism-like behaviors through gut microbiota and vitamin B6/dopamine disruption
PMID: 32819434
6
EPHB6 has unique structural features requiring co-receptors due to kinase-inactive nature
PMID: 33770085
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
EPHA6Shared pathway100%EFNA5Protein interaction100%EFNB3Protein interaction100%EPHA10Protein interaction98%ABL1Protein interaction95%EPHA2Protein interaction93%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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EPHB6EPHA6EFNA5EFNB3EPHA10ABL1EPHA2
PROTEIN STRUCTURE
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PDB7K7J · 3.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.61LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.48 [0.39–0.61]
RankingsWhere EPHB6 stands among ~20K protein-coding genes
  • #5,606of 20,598
    Most Researched85
  • #4,202of 17,882
    Most Constrained (LOEUF)0.61 · top quartile
Genes detectedEPHB6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The gut microbiota regulates autism-like behavior by mediating vitamin B
PMID: 32819434
Microbiome · 2020
1.00
2
The EphB6 Receptor: Kinase-Dead but Very Much Alive.
PMID: 34360976
Int J Mol Sci · 2021
0.90
3
Implications of EPHB6, EFNB2, and EFNB3 expressions in human neuroblastoma.
PMID: 10984508
Proc Natl Acad Sci U S A · 2000
0.80
4
Clinical Significance of EphB4 and EphB6 Expression in Human Malignant and Benign Thyroid Lesions.
PMID: 26220827
Pathol Oncol Res · 2016
0.70
5
EphB6 receptor significantly alters invasiveness and other phenotypic characteristics of human breast carcinoma cells.
PMID: 19234485
Oncogene · 2009
0.60