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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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EXTL2
exostosin like glycosyltransferase 2
Chromosome 1 · 1p21.2
NCBI Gene: 2135Ensembl: ENSG00000162694.14HGNC: HGNC:3516UniProt: F5GZK1
32PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activityprotein bindingalpha-1,4-N-acetylgalactosaminyltransferase activityN-acetylglucosamine metabolic processmultiple sclerosisgastric cancerchronic kidney diseasecancer
✦AI Summary

EXTL2 is a glycosyltransferase that functions as an alpha-1,4-N-acetylhexosaminyltransferase involved in heparan sulfate (HS) biosynthesis 1. Unlike EXT1/EXT2 which form a polymerase for continuous HS chain elongation 2, EXTL2 acts as a negative regulator by transferring N-acetylglucosamine (GlcNAc) residues to phosphorylated tetrasaccharide linkage regions, terminating chain elongation 2. The enzyme is ubiquitously expressed across tissues and during early embryonic development 1. EXTL2 maintains tissue homeostasis under pathological conditions. EXTL2-knockout mice exhibit elevated glycosaminoglycan production and impaired liver regeneration following chemical-induced liver failure due to reduced hepatocyte-growth-factor signaling 2. Additionally, EXTL2 loss enhances vascular calcification through altered bone-morphogenetic-protein signaling in vascular smooth muscle cells 2. In gastric cancer, EXTL2 deletion increases heparan sulfate levels and Syndecan-4 expression, promoting aggressive cellular phenotypes including enhanced motility and invasion 3. Clinically, EXTL2 dysfunction associates with multiple diseases. Reduced EXTL2 expression occurs in osteoarthritis and Kashin-Beck disease cartilage, correlating with impaired chondroitin sulfate synthesis and cartilage damage 4. Genome-wide association studies identified EXTL2 variants associated with asthma exacerbations across multi-ancestry populations 5. EXTL2 targeting via RNA interference shows therapeutic potential for heparan-sulfate-storing mucopolysaccharidoses 6.

Sources cited
1
EXTL2 transfers GlcNAc to phosphorylated tetrasaccharide linkage regions to terminate HS chain elongation; EXTL2-knockout mice show impaired liver regeneration and enhanced vascular calcification
PMID: 24176719
2
EXTL2 is an alpha-1,4-N-acetylhexosaminyltransferase; ubiquitously expressed in adult tissues and early embryonic development
PMID: 10965119
3
EXTL2 acts as negative regulator of HS biosynthesis; EXTL2 knockout increases HS and Syndecan-4 expression, promoting cancer cell motility and invasion
PMID: 36181793
4
EXTL2 expression is reduced in osteoarthritis and Kashin-Beck disease cartilage, associated with impaired chondroitin sulfate synthesis and cartilage damage
PMID: 32517548
5
EXTL2 variants associate with asthma exacerbations in multi-ancestry genome-wide association study
PMID: 35754128
6
EXTL2 gene silencing reduces heparan sulfate synthesis and lysosomal GAG accumulation in mucopolysaccharidosis fibroblasts, supporting substrate deprivation therapy potential
PMID: 19690583
7
EXTL2 crystal structure reveals mechanism of retaining N-acetylsugar transfer reaction for GAG biosynthesis
PMID: 12659829
Disease Associationsⓘ20
multiple sclerosisOpen Targets
0.13Weak
gastric cancerOpen Targets
0.04Suggestive
chronic kidney diseaseOpen Targets
0.04Suggestive
cancerOpen Targets
0.02Suggestive
retinitis pigmentosa 1Open Targets
0.02Suggestive
neoplasmOpen Targets
0.01Suggestive
mucopolysaccharidosis type 3COpen Targets
0.01Suggestive
myeloid sarcomaOpen Targets
0.01Suggestive
Kashin-Beck diseaseOpen Targets
0.01Suggestive
osteoarthritisOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
mucopolysaccharidosisOpen Targets
0.01Suggestive
lung carcinomaOpen Targets
0.01Suggestive
Pick diseaseOpen Targets
0.00Suggestive
colorectal carcinomaOpen Targets
0.00Suggestive
COVID-19–associated multisystem inflammatory syndrome in adultsOpen Targets
0.00Suggestive
Multiple osteochondromasOpen Targets
0.00Suggestive
liver failureOpen Targets
0.00Suggestive
liver diseaseOpen Targets
0.00Suggestive
osteopetrosisOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
EXTL3Protein interaction75%FAM20BProtein interaction56%HS6ST3Shared pathway50%HS6ST2Shared pathway50%HS3ST6Shared pathway50%HS3ST4Shared pathway50%
Tissue Expression6 tissues
Brain
100%
Liver
72%
Ovary
71%
Heart
61%
Lung
32%
Bone Marrow
30%
Gene Interaction Network
Click a node to explore
EXTL2EXTL3FAM20BHS6ST3HS6ST2HS3ST6HS3ST4
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q8N8F1
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.05LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.71 [0.49–1.05]
RankingsWhere EXTL2 stands among ~20K protein-coding genes
  • #11,511of 20,598
    Most Researched32
  • #10,569of 17,882
    Most Constrained (LOEUF)1.05
Genes detectedEXTL2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
EXTL2 controls liver regeneration and aortic calcification through xylose kinase-dependent regulation of glycosaminoglycan biosynthesis.
PMID: 24176719
Matrix Biol · 2014
1.00
2
Gene silencing of EXTL2 and EXTL3 as a substrate deprivation therapy for heparan sulphate storing mucopolysaccharidoses.
PMID: 19690583
Eur J Hum Genet · 2010
0.90
3
Characterization and genomic localization of the mouse Extl2 gene.
PMID: 10965119
Cytogenet Cell Genet · 2000
0.80
4
Glycosyltransferases EXTL2 and EXTL3 cellular balance dictates heparan sulfate biosynthesis and shapes gastric cancer cell motility and invasion.
PMID: 36181793
J Biol Chem · 2022
0.70
5
Altered Expression of Aggrecan, FAM20B, B3GALT6, and EXTL2 in Patients with Osteoarthritis and Kashin-Beck Disease.
PMID: 32517548
Cartilage · 2021
0.60