HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
50 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
F2
coagulation factor II, thrombin
Chromosome 11 Β· 11p11.2
NCBI Gene: 2147Ensembl: ENSG00000180210.16HGNC: HGNC:3535UniProt: P00734
1,489PubMed Papers
24Diseases
14Drugs
40Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneProtease
RESEARCH IMPACT
Highly Studied
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
regulation of cytosolic calcium ion concentrationprotein bindingantimicrobial humoral immune response mediated by antimicrobial peptidethrombin-activated receptor signaling pathwaycongenital prothrombin deficiencyCongenital factor II deficiencythrombophilia due to thrombin defectvenous thromboembolism
✦AI Summary

F2 encodes thrombin, a serine protease central to hemostasis and inflammation. Thrombin cleaves fibrinogen to fibrin and activates coagulation factors V, VII, VIII, XIII, and XI, with factor XI activation enhanced by contact with negatively charged surfaces 12. Beyond coagulation, thrombin promotes pro-inflammatory cytokine production (MCP-1/CCL2, IL-8/CXCL8) in endothelial cells 34. The protein functions in diverse physiological processes including platelet activation, wound healing, and antimicrobial responses. F2 deficiency causes bleeding disorders, while dysregulation contributes to thrombophilia and recurrent pregnancy loss. Thrombin's protease activity also participates in fibrinolysis and extracellular matrix remodeling. Clinical significance includes its role in ischemic stroke pathogenesis, where excessive thrombin generation promotes thrombotic events. The protein's involvement in both pro-coagulant and pro-inflammatory pathways makes it a critical therapeutic target; anticoagulants inhibiting thrombin are foundational for stroke prevention and thrombosis management. Understanding F2 regulation is essential for balancing hemostatic requirements against thrombotic and inflammatory complications.

Sources cited
1
Thrombin activates coagulation factor XI, with activation promoted by contact with negatively charged surfaces
PMID: 2019570
2
Factor XI activation by thrombin is promoted by contact with negatively charged surfaces
PMID: 21976677
3
Thrombin triggers production of pro-inflammatory cytokines MCP-1/CCL2 and IL-8/CXCL8 in endothelial cells
PMID: 30568593
4
Thrombin triggers production of pro-inflammatory cytokines in endothelial cells
PMID: 9780208
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜24
congenital prothrombin deficiencyOpen Targets
0.82Strong
Congenital factor II deficiencyOpen Targets
0.80Strong
thrombophilia due to thrombin defectOpen Targets
0.74Strong
venous thromboembolismOpen Targets
0.73Strong
strokeOpen Targets
0.71Strong
deep vein thrombosisOpen Targets
0.69Moderate
Ischemic strokeOpen Targets
0.67Moderate
prothrombin deficiencyOpen Targets
0.66Moderate
blood coagulation diseaseOpen Targets
0.65Moderate
pulmonary embolismOpen Targets
0.65Moderate
ThromboembolismOpen Targets
0.64Moderate
Venous thrombosisOpen Targets
0.62Moderate
atrial fibrillationOpen Targets
0.60Moderate
ThrombocytopeniaOpen Targets
0.59Moderate
habitual abortionOpen Targets
0.58Moderate
thrombotic diseaseOpen Targets
0.57Moderate
Recurrent thrombophlebitisOpen Targets
0.57Moderate
hepatic veno-occlusive diseaseOpen Targets
0.55Moderate
acute coronary syndromeOpen Targets
0.53Moderate
heart diseaseOpen Targets
0.52Moderate
Factor II deficiencyUniProt
Ischemic strokeUniProt
Pregnancy loss, recurrent, 2UniProt
Thrombophilia due to thrombin defectUniProt
Pathogenic Variants40
NM_000506.5(F2):c.*97G>APathogenic
Ischemic stroke|Pregnancy loss, recurrent, susceptibility to, 2|Congenital prothrombin deficiency|Venous thromboembolism|not provided|Cerebral palsy|Thrombophilia caused by F2 prothrombin deficiency|Pregnancy loss, recurrent, susceptibility to, 2;Thrombophilia due to thrombin defect;Ischemic stroke;Congenital prothrombin deficiency|Thrombophilia due to thrombin defect|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026
NM_000506.5(F2):c.1499G>A (p.Arg500Gln)Pathogenic
Congenital prothrombin deficiency|Pregnancy loss, recurrent, susceptibility to, 2;Congenital prothrombin deficiency;Ischemic stroke;Thrombophilia due to thrombin defect|F2-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 500
NM_000506.5(F2):c.1741C>T (p.Arg581Cys)Pathogenic
Congenital prothrombin deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 581
NM_000506.5(F2):c.1787G>A (p.Arg596Gln)Pathogenic
not provided|Congenital prothrombin deficiency|Thrombophilia due to thrombin defect
β˜…β˜…β˜†β˜†2024β†’ Residue 596
NM_000506.3(F2):c.1381C>T (p.Arg461Trp)Pathogenic
not provided|Congenital prothrombin deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 461
NM_000506.5(F2):c.941G>A (p.Arg314His)Likely pathogenic
Prolonged prothrombin time|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 314
NM_000506.5(F2):c.1159C>T (p.Gln387Ter)Pathogenic
not provided|Congenital prothrombin deficiency
β˜…β˜…β˜†β˜†2023β†’ Residue 387
NM_000506.5(F2):c.13C>T (p.Arg5Ter)Pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 5
NM_000506.5(F2):c.1130+1G>ALikely pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2025
NM_000506.5(F2):c.1678C>T (p.Arg560Ter)Pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 560
NM_000506.3(F2):c.940C>T (p.Arg314Cys)Pathogenic
Congenital prothrombin deficiency|Thrombophilia due to thrombin defect
β˜…β˜†β˜†β˜†2024β†’ Residue 314
NM_000506.5(F2):c.422+1G>ALikely pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2024
NM_000506.3(F2):c.1273C>T (p.Arg425Cys)Likely pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 425
NM_000506.5(F2):c.1750C>T (p.Gln584Ter)Likely pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 584
NM_000506.5(F2):c.317-1G>ALikely pathogenic
Pregnancy loss, recurrent, susceptibility to, 2;Ischemic stroke;Congenital prothrombin deficiency;Thrombophilia due to thrombin defect
β˜…β˜†β˜†β˜†2024
NM_000506.5(F2):c.349C>T (p.Arg117Ter)Pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 117
NM_000506.5(F2):c.923_926del (p.Asp308fs)Pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 308
NM_000506.5(F2):c.1745G>A (p.Trp582Ter)Likely pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 582
NM_000506.5(F2):c.454_457del (p.Leu152fs)Likely pathogenic
F2-related disorder
β˜…β˜†β˜†β˜†2023β†’ Residue 152
NM_000506.5(F2):c.1786C>T (p.Arg596Trp)Pathogenic
Congenital prothrombin deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 596
View on ClinVar β†—
Drug Targets14
ANTITHROMBIN ALFAApproved
Coagulation factor X inhibitor
ARGATROBANApproved
Thrombin inhibitor
Thrombocytopenia
ATECEGATRAN METOXILPhase II
Thrombin inhibitor
BIVALIRUDINApproved
Thrombin inhibitor
thrombotic disease
DABIGATRANApproved
Thrombin inhibitor
stroke
DABIGATRAN ETEXILATEApproved
Thrombin inhibitor
DABIGATRAN ETEXILATE MESYLATEApproved
Thrombin inhibitor
DEFIBROTIDEApproved
Adenosine A2 receptor agonist
Recurrent thrombophlebitis
DESIRUDINApproved
Thrombin inhibitor
Recurrent thrombophlebitis
ICHORCUMABPhase II
Thrombin inhibitor
LEPIRUDINApproved
Thrombin inhibitor
Recurrent thrombophlebitis
PROTHROMBINApproved
Thrombin exogenous protein
blood coagulation disease
PROTHROMBIN COMPLEX CONCENTRATEPhase III
Coagulation factor VII exogenous protein
acquired coagulation factor deficiency
XIMELAGATRANApproved
Thrombin inhibitor
Recurrent thrombophlebitis
Related Genes
CFIProtein interaction100%KLKB1Protein interaction100%F8Protein interaction100%C5Protein interaction99%CPB2Protein interaction99%F11Protein interaction99%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
0%
Brain
0%
Ovary
0%
Lung
0%
Heart
0%
Gene Interaction Network
Click a node to explore
F2CFIKLKB1F8C5CPB2F11
PROTEIN STRUCTURE
Preparing viewer…
PDB4UD9 Β· 1.12 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.55Moderately Constrained
pLIβ“˜
0.15Tolerant
Observed/Expected LoF0.42 [0.32–0.55]
RankingsWhere F2 stands among ~20K protein-coding genes
  • #87of 20,598
    Most Researched1,489 Β· top 1%
  • #136of 1,025
    FDA-Approved Drug Targets11 Β· top quartile
  • #1,530of 5,498
    Most Pathogenic Variants40
  • #3,545of 17,882
    Most Constrained (LOEUF)0.55 Β· top quartile
Genes detectedF2
Sources retrieved50 papers
Response timeβ€”
πŸ“„ Sources
50β–Ό
1
F2-isoprostanes in human health and diseases: from molecular mechanisms to clinical implications.
PMID: 18522490
Antioxid Redox Signal Β· 2008
1.00
2
Comparison of PB1-F2 Proximity Interactomes Reveals Functional Differences between a Human and an Avian Influenza Virus.
PMID: 36851542
Viruses Β· 2023
0.90
3
FOXF2 Regulates PRUNE2 Transcription in the Pathogenesis of Colorectal Cancer.
PMID: 35929169
Technol Cancer Res Treat Β· 2022
0.86
4
Prostaglandin E and F2 alpha receptors in human myometrium during the menstrual cycle and in pregnancy and labor.
PMID: 2866714
Am J Obstet Gynecol Β· 1985
0.82
5
Fβ‚‚-isoprostane formation, measurement and interpretation: the role of exercise.
PMID: 20951733
Prog Lipid Res Β· 2011
0.80