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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
FANCL
FA complementation group L
Chromosome 2 Β· 2p16.1
NCBI Gene: 55120Ensembl: ENSG00000115392.13HGNC: HGNC:20748UniProt: A0A8Q3SIK5
96PubMed Papers
21Diseases
0Drugs
123Pathogenic Variants
FUNCTIONAL ROLE
DNA Repair
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
chromatinprotein bindingubiquitin protein ligase bindingubiquitin protein ligase activityFanconi anemia complementation group LFanconi anemiamyelodysplastic syndromeBone marrow hypocellularity
✦AI Summary

FANCL is a RING-type ubiquitin ligase that functions as a core component of the Fanconi anemia (FA) pathway, mediating monoubiquitination of FANCD2 and FANCI in partnership with the E2 enzyme UBE2T 123456. This ubiquitination represents a critical regulatory step in cellular DNA damage responses. FANCL promotes both interstrand crosslink (ICL) repair and homologous recombination (HR) at double-strand breaks (DSBs) through FANCD2-dependent mechanisms and by facilitating CtIP accumulation at DSB sites, enabling DNA end resection and Rad51 loading 7. Mutations in FANCL cause Fanconi anemia complementation group L, characterized by chr2 instability and cancer predisposition 89. Additionally, FANCL deficiency predisposes to endothelial damage and pulmonary arterial hypertension (PAH) through accumulation of DNA damage in pulmonary microvascular endothelial cells, with downregulation observed in patients with idiopathic PAH 10. FANCL mutations have also been associated with primary ovarian insufficiency, implicating FA pathway dysfunction in reproductive system development 11.

Sources cited
1
FANCL mediates monoubiquitination of FANCD2 with UBE2T
PMID: 12973351
2
FANCL-UBE2T interaction in FANCD2 monoubiquitination
PMID: 16916645
3
FANCL ubiquitin ligase activity in DNA damage pathway
PMID: 17938197
4
FANCL-mediated FANCD2 monoubiquitination in FA pathway
PMID: 19111657
5
FANCL role in FANCD2 ubiquitination
PMID: 24389026
6
FANCL mediates monoubiquitination of FANCI
PMID: 19589784
7
FANCL promotes HR at DSBs through CtIP-dependent end resection and FANCD2 accumulation
PMID: 39152113
8
FANCL mutations detected in breast cancer patients as pathogenic variants
PMID: 32091409
9
FANCL loss-of-function variants identified as candidate cancer gene variants
PMID: 30306255
10
FANCL deficiency causes pulmonary arterial hypertension through endothelial DNA damage
PMID: 40479584
11
FANCL mutations associated with primary ovarian insufficiency
PMID: 34794894
Disease Associationsβ“˜21
Fanconi anemia complementation group LOpen Targets
0.81Strong
Fanconi anemiaOpen Targets
0.79Strong
myelodysplastic syndromeOpen Targets
0.46Moderate
Bone marrow hypocellularityOpen Targets
0.46Moderate
acute myeloid leukemiaOpen Targets
0.46Moderate
Menkes diseaseOpen Targets
0.46Moderate
genetic disorderOpen Targets
0.45Moderate
Fanconi anemia complementation group AOpen Targets
0.45Moderate
hypertensionOpen Targets
0.40Weak
head and neck malignant neoplasiaOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.37Weak
Abnormality of the skeletal systemOpen Targets
0.34Weak
VACTERL association, X-linked, with or without hydrocephalusOpen Targets
0.33Weak
VACTERL/vater associationOpen Targets
0.33Weak
intelligenceOpen Targets
0.32Weak
substance-related disorderOpen Targets
0.32Weak
obesityOpen Targets
0.31Weak
mathematical abilityOpen Targets
0.30Weak
type 2 diabetes mellitusOpen Targets
0.30Weak
obstructive sleep apneaOpen Targets
0.30Weak
Fanconi anemia complementation group LUniProt
Pathogenic Variants123
NM_018062.4(FANCL):c.1092G>A (p.Lys364=)Pathogenic
Fanconi anemia complementation group L|Fanconi anemia
β˜…β˜…β˜†β˜†2026β†’ Residue 364
NM_018062.4(FANCL):c.64A>T (p.Lys22Ter)Pathogenic
Fanconi anemia complementation group L|Fanconi anemia
β˜…β˜…β˜†β˜†2026β†’ Residue 22
NM_018062.4(FANCL):c.903+1_903+2delLikely pathogenic
Fanconi anemia|Fanconi anemia complementation group L
β˜…β˜…β˜†β˜†2026
NM_018062.4(FANCL):c.2T>C (p.Met1Thr)Pathogenic
Fanconi anemia|not provided|Fanconi anemia complementation group L|not specified
β˜…β˜…β˜†β˜†2026β†’ Residue 1
NM_018062.4(FANCL):c.156-2A>TLikely pathogenic
Fanconi anemia complementation group L|Fanconi anemia
β˜…β˜…β˜†β˜†2026
NM_018062.4(FANCL):c.40del (p.Leu14fs)Pathogenic
Fanconi anemia|Fanconi anemia complementation group L
β˜…β˜…β˜†β˜†2025β†’ Residue 14
NM_018062.4(FANCL):c.430del (p.Ser144fs)Pathogenic
Fanconi anemia complementation group L|VACTERL association, X-linked, with or without hydrocephalus|not provided|Fanconi anemia
β˜…β˜…β˜†β˜†2025β†’ Residue 144
NM_018062.4(FANCL):c.1A>G (p.Met1Val)Pathogenic
Fanconi anemia|Fanconi anemia complementation group L
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_018062.4(FANCL):c.903+1delLikely pathogenic
Fanconi anemia|Fanconi anemia complementation group L
β˜…β˜…β˜†β˜†2025
NM_018062.4(FANCL):c.273+1G>ALikely pathogenic
Fanconi anemia|Fanconi anemia complementation group L
β˜…β˜…β˜†β˜†2025
NM_018062.4(FANCL):c.565C>T (p.Gln189Ter)Pathogenic
not provided|Fanconi anemia
β˜…β˜…β˜†β˜†2025β†’ Residue 189
NM_018062.4(FANCL):c.472-1G>CPathogenic
Fanconi anemia|not provided|Fanconi anemia complementation group L
β˜…β˜…β˜†β˜†2025
NM_018062.4(FANCL):c.932dup (p.Tyr311Ter)Pathogenic
Fanconi anemia complementation group L|Fanconi anemia|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 311
NM_018062.4(FANCL):c.378del (p.Val127fs)Pathogenic
Fanconi anemia|Fanconi anemia complementation group L|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 127
NM_018062.4(FANCL):c.738dup (p.Met247fs)Likely pathogenic
Fanconi anemia complementation group L
β˜…β˜…β˜†β˜†2025β†’ Residue 247
NM_018062.4(FANCL):c.1051_1052dup (p.Ser351fs)Likely pathogenic
Fanconi anemia complementation group L|Fanconi anemia
β˜…β˜…β˜†β˜†2025β†’ Residue 351
NM_018062.4(FANCL):c.933T>G (p.Tyr311Ter)Pathogenic
Fanconi anemia|Fanconi anemia complementation group L
β˜…β˜…β˜†β˜†2025β†’ Residue 311
NM_018062.4(FANCL):c.739_740dup (p.Met247fs)Pathogenic
not provided|Fanconi anemia|Fanconi anemia complementation group L
β˜…β˜…β˜†β˜†2025β†’ Residue 247
NM_018062.4(FANCL):c.1029dup (p.Gly344fs)Pathogenic
Fanconi anemia complementation group L|Fanconi anemia
β˜…β˜…β˜†β˜†2024β†’ Residue 344
NM_018062.4(FANCL):c.1039_1042dup (p.Ser348delinsAsnTer)Likely pathogenic
Fanconi anemia complementation group L|Fanconi anemia
β˜…β˜…β˜†β˜†2024β†’ Residue 348
View on ClinVar β†—
Related Genes
FANCEProtein interaction100%HES1Protein interaction100%RAD51CProtein interaction100%UBE2TProtein interaction100%ERCC4Protein interaction100%CENPXProtein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
82%
Liver
80%
Heart
77%
Brain
57%
Lung
36%
Gene Interaction Network
Click a node to explore
FANCLFANCEHES1RAD51CUBE2TERCC4CENPX
PROTEIN STRUCTURE
Preparing viewer…
PDB3ZQS Β· 2.00 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.44LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.13 [0.89–1.44]
RankingsWhere FANCL stands among ~20K protein-coding genes
  • #4,981of 20,598
    Most Researched96 Β· top quartile
  • #639of 5,498
    Most Pathogenic Variants123 Β· top quartile
  • #14,809of 17,882
    Most Constrained (LOEUF)1.44
Genes detectedFANCL
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Evidence-based clinical practice guidelines for gastroesophageal reflux disease 2021.
PMID: 35226174
J Gastroenterol Β· 2022
1.00
2
Evidence-Based Clinical Guidelines for Chronic Diarrhea 2023.
PMID: 39197422
Digestion Β· 2024
0.90
3
Evidence-Based Clinical Guidelines for Chronic Constipation 2023.
PMID: 39159626
Digestion Β· 2025
0.80
4
Genetics of ovarian insufficiency and defects of folliculogenesis.
PMID: 34794894
Best Pract Res Clin Endocrinol Metab Β· 2022
0.70
5
PMID: 20301575
0.60