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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
FAT4
FAT atypical cadherin 4
Chromosome 4 Β· 4q28.1
NCBI Gene: 79633Ensembl: ENSG00000196159.14HGNC: HGNC:23109UniProt: A0A6Q8JR05
61PubMed Papers
22Diseases
0Drugs
67Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
extracellular exosomeprotein bindingaxonogenesisplasma membraneHennekam lymphangiectasia-lymphedema syndrome 2van Maldergem syndrome 2Cerebro-facio-articular syndromePeriventricular heterotopia
✦AI Summary

FAT4 is a calcium-dependent atypical cadherin that functions as a tumor suppressor through multiple regulatory mechanisms. At the cellular level, FAT4 maintains planar cell polarity and regulates the Hippo-YAP signaling pathway, inhibiting neuroprogenitor proliferation 1. Mechanistically, FAT4 antagonizes Wnt/Ξ²-catenin pathway activation by binding Ξ²-catenin and promoting its phosphorylation and degradation, thereby suppressing PD-L1 expression and membrane localization in cancer cells 1. FAT4 expression is regulated by METTL14-mediated m6A RNA methylation in ocular melanoma, where restored FAT4 levels suppress tumor growth 2. In diabetic complications, METTL3-mediated m6A methylation represses FAT4 expression, impairing pericyte function and vascular integrity 3. FAT4 is targeted for ubiquitin-proteasome degradation by UBE4B in gastric cancer, promoting tumor progression 4. Additionally, FAT4 acts as a receptor for the p53-regulated tumor suppressor Reprimo, activating the Hippo-YAP/TAZ-p73 apoptotic pathway 5. Loss-of-function FAT4 mutations occur in ~27% of esophageal squamous cell carcinomas 6. FAT4 mutations cause periventricular heterotopia with associated neuronal hyperactivity 7, consistent with its developmental role in cortical organization and neurogenesis.

Sources cited
1
FAT4 functions as tumor suppressor; binds Ξ²-catenin to antagonize its nuclear localization and decrease PD-L1 expression in cervical cancer
PMID: 37658376
2
METTL14-mediated m6A modification promotes FAT4 expression as a tumor suppressor in ocular melanoma
PMID: 37466203
3
METTL3-mediated m6A methylation represses FAT4 expression, impairing pericyte function in diabetes-induced microvascular complications
PMID: 34987645
4
UBE4B mediates FAT4 ubiquitination and degradation, promoting gastric cancer proliferation and metastasis
PMID: 40701960
5
FAT4 acts as receptor for Reprimo and regulates the Hippo-YAP/TAZ-p73 apoptotic pathway
PMID: 39913207
6
FAT1-FAT4 mutations occur in 27% of esophageal squamous cell carcinomas; Hippo pathway dysregulation
PMID: 25151357
7
FAT4 mutations cause periventricular heterotopia with neuronal hyperactivity and altered synaptic function
PMID: 39966398
8
FAT4 loss-of-function contributes to esophageal squamous cell carcinoma initiation and immune evasion
PMID: 37257519
Disease Associationsβ“˜22
Hennekam lymphangiectasia-lymphedema syndrome 2Open Targets
0.78Strong
van Maldergem syndrome 2Open Targets
0.76Strong
Cerebro-facio-articular syndromeOpen Targets
0.65Moderate
Periventricular heterotopiaOpen Targets
0.50Moderate
van Maldergem syndromeOpen Targets
0.49Moderate
Hennekam syndromeOpen Targets
0.48Moderate
colorectal adenocarcinomaOpen Targets
0.42Moderate
glaucomaOpen Targets
0.40Weak
melanomaOpen Targets
0.40Weak
gastric adenocarcinomaOpen Targets
0.39Weak
open-angle glaucomaOpen Targets
0.38Weak
skin basal cell carcinomaOpen Targets
0.37Weak
cutaneous melanomaOpen Targets
0.37Weak
breast ductal adenocarcinomaOpen Targets
0.37Weak
cecum adenocarcinomaOpen Targets
0.37Weak
colon adenocarcinomaOpen Targets
0.37Weak
desmoplastic melanomaOpen Targets
0.37Weak
esophageal adenocarcinomaOpen Targets
0.37Weak
gastric carcinomaOpen Targets
0.37Weak
lymphoid neoplasmOpen Targets
0.37Weak
Hennekam lymphangiectasia-lymphedema syndrome 2UniProt
Van Maldergem syndrome 2UniProt
Pathogenic Variants67
NM_001291303.3(FAT4):c.13588C>T (p.Gln4530Ter)Pathogenic
Hennekam lymphangiectasia-lymphedema syndrome 2|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 4530
NM_001291303.3(FAT4):c.7504G>T (p.Glu2502Ter)Pathogenic
not provided|Autosomal recessive FAT4-related disorders
β˜…β˜…β˜†β˜†2025β†’ Residue 2502
NM_001291303.3(FAT4):c.5704C>T (p.Arg1902Ter)Pathogenic
Hennekam lymphangiectasia-lymphedema syndrome 2;Van Maldergem syndrome 2|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1902
NM_001291303.3(FAT4):c.6700C>T (p.Arg2234Ter)Pathogenic
Van Maldergem syndrome|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 2234
NM_001291303.3(FAT4):c.3032_3033dup (p.Asn1012Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2026β†’ Residue 1012
NM_001291303.3(FAT4):c.7670del (p.Thr2557fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2026β†’ Residue 2557
NM_001291303.3(FAT4):c.775dup (p.Val259fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 259
NM_001291303.3(FAT4):c.7787T>A (p.Leu2596Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 2596
NM_001291303.3(FAT4):c.10730_10731del (p.Glu3577fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 3577
NM_001291303.3(FAT4):c.6887C>A (p.Ser2296Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 2296
NM_001291303.3(FAT4):c.108del (p.Gln37fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 37
NM_001291303.3(FAT4):c.10737del (p.Ile3579fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 3579
NM_001291303.3(FAT4):c.743del (p.Pro248fs)Likely pathogenic
FAT4-related disorder
β˜…β˜†β˜†β˜†2025β†’ Residue 248
NM_001291303.3(FAT4):c.10030C>T (p.Arg3344Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 3344
NM_001291303.3(FAT4):c.8059C>T (p.Arg2687Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 2687
NM_001291303.3(FAT4):c.8357dup (p.Asn2786fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 2786
NM_001291303.3(FAT4):c.12299+1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_001291303.3(FAT4):c.8536C>T (p.Arg2846Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 2846
NM_001291303.3(FAT4):c.10011T>G (p.Tyr3337Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 3337
NM_001291303.3(FAT4):c.3926del (p.Asn1309fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 1309
View on ClinVar β†—
Related Genes
FJX1Protein interaction87%VANGL2Protein interaction87%CTNNB1Protein interaction78%CDHR2Shared pathway44%DCHS2Shared pathway44%DCHS1Shared pathway41%
Tissue Expression6 tissues
Heart
100%
Lung
74%
Ovary
59%
Liver
30%
Brain
21%
Bone Marrow
4%
Gene Interaction Network
Click a node to explore
FAT4FJX1VANGL2CTNNB1CDHR2DCHS2DCHS1
PROTEIN STRUCTURE
Preparing viewer…
PDB8EGW Β· 2.30 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.32Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.26 [0.22–0.32]
RankingsWhere FAT4 stands among ~20K protein-coding genes
  • #7,550of 20,598
    Most Researched61
  • #1,089of 5,498
    Most Pathogenic Variants67 Β· top quartile
  • #1,267of 17,882
    Most Constrained (LOEUF)0.32 Β· top 10%
Genes detectedFAT4
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
FAT4 overexpression promotes antitumor immunity by regulating the Ξ²-catenin/STT3/PD-L1 axis in cervical cancer.
PMID: 37658376
J Exp Clin Cancer Res Β· 2023
1.00
2
Targeting histone deacetylase suppresses tumor growth through eliciting METTL14-modified m
PMID: 37466203
Cancer Commun (Lond) Β· 2023
0.90
3
METTL3-mediated
PMID: 34987645
Theranostics Β· 2022
0.80
4
UBE4B promotes gastric cancer proliferation and metastasis by mediating FAT4 ubiquitination and degradation.
PMID: 40701960
Cell Death Dis Β· 2025
0.70
5
Key Genetic Determinants Driving Esophageal Squamous Cell Carcinoma Initiation and Immune Evasion.
PMID: 37257519
Gastroenterology Β· 2023
0.60