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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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FBXO39
F-box protein 39
Chromosome 17 · 17p13.1
NCBI Gene: 162517Ensembl: ENSG00000177294.7HGNC: HGNC:28565UniProt: Q8N4B4
15PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingSCF-dependent proteasomal ubiquitin-dependent protein catabolic processSCF ubiquitin ligase complexglioblastoma multiformebreast cancercervical squamous cell carcinomacervical carcinoma
✦AI Summary

FBXO39 (F-box protein 39) functions as a substrate-recognition component of SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complexes, facilitating targeted protein degradation through the ubiquitin-proteasome system 1. The protein plays crucial roles in cellular proliferation and apoptosis regulation, as demonstrated by knockdown studies showing reduced cell proliferation and increased apoptosis in osteosarcoma cells 1. FBXO39 exhibits cancer-testis antigen properties, with restricted expression in normal testicular tissue but aberrant overexpression in various malignancies 23. Mechanistically, FBXO39 maintains mitochondrial homeostasis by targeting lysine-specific demethylase 5A (KDM5A) for ubiquitination-dependent degradation, which regulates H3K4me3 demethylation at the SSBP1 promoter and prevents mitochondrial dysfunction and ferroptosis 4. Clinically, FBXO39 overexpression correlates with poor prognosis across multiple cancer types including glioblastoma, colon cancer, and breast cancer 5236. In gliomas, high FBXO39 expression associates with increased tumor grade, enhanced invasion/migration capabilities, and stem cell characteristics 5. Its diagnostic and prognostic potential, combined with its cancer-restricted expression pattern, makes FBXO39 an attractive biomarker and potential immunotherapy target 76.

Sources cited
1
FBXO39 is an F-box protein component of SCF E3 ubiquitin ligase complex; knockdown reduces proliferation and increases apoptosis in osteosarcoma cells
PMID: 30008875
2
FBXO39 is upregulated in glioma, correlates with poor prognosis, tumor grade, and promotes invasion/migration and stemness
PMID: 36244247
3
FBXO39 regulates mitochondrial function by targeting KDM5A for ubiquitination, affecting SSBP1 expression through H3K4me3 demethylation
PMID: 41781602
4
FBXO39 is a cancer-testis antigen overexpressed in colon cancer with diagnostic biomarker potential
PMID: 34380828
5
FBXO39 shows cancer-testis antigen properties with upregulation in breast cancer compared to normal tissue
PMID: 24377578
6
FBXO39 expression correlates with lymph node involvement in colorectal cancer and has prognostic value
PMID: 29802700
7
FBXO39 expression correlates with survival in GBM patients and serves as prognostic biomarker
PMID: 40504854
Disease Associationsⓘ20
glioblastoma multiformeOpen Targets
0.06Suggestive
breast cancerOpen Targets
0.05Suggestive
cervical squamous cell carcinomaOpen Targets
0.03Suggestive
cervical carcinomaOpen Targets
0.03Suggestive
colorectal carcinomaOpen Targets
0.03Suggestive
gliomaOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
systemic lupus erythematosusOpen Targets
0.02Suggestive
cancerOpen Targets
0.02Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.02Suggestive
osteosarcomaOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
invasive breast ductal carcinomaOpen Targets
0.00Suggestive
LeishmaniasisOpen Targets
0.00Suggestive
esophageal squamous cell carcinomaOpen Targets
0.00Suggestive
head and neck squamous cell carcinomaOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
multiple myelomaOpen Targets
0.00Suggestive
squamous cell neoplasmOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FBXW10Shared pathway100%FBXO46Shared pathway100%FBXO25Shared pathway100%FBXO24Shared pathway100%FBXO42Shared pathway100%FBXO34Shared pathway100%
Tissue Expression6 tissues
Ovary
100%
Liver
85%
Bone Marrow
46%
Lung
15%
Heart
12%
Brain
1%
Gene Interaction Network
Click a node to explore
FBXO39FBXW10FBXO46FBXO25FBXO24FBXO42FBXO34
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q8N4B4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.82LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.57 [0.41–0.82]
RankingsWhere FBXO39 stands among ~20K protein-coding genes
  • #15,558of 20,598
    Most Researched15
  • #6,946of 17,882
    Most Constrained (LOEUF)0.82
Genes detectedFBXO39
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Knockdown of FBXO39 inhibits proliferation and promotes apoptosis of human osteosarcoma U-2OS cells.
PMID: 30008875
Oncol Lett · 2018
1.00
2
The cancer-testis antigen FBXO39 predicts poor prognosis and is associated with stemness and aggressiveness in glioma.
PMID: 36244247
Pathol Res Pract · 2022
0.90
3
Integrating sperm cell transcriptome and seminal plasma metabolome to analyze the molecular regulatory mechanism of sperm motility in Holstein stud bulls.
PMID: 37366074
J Anim Sci · 2023
0.80
4
Significance of cancer testis-associated antigens (
PMID: 34380828
Indian J Cancer · 2022
0.70
5
FBXO39 knockdown promotes spermatogenesis impairment by inducing mitochondrial dysfunction and ferroptosis via inhibiting KDM5A ubiquitination and regulating H3K4me3 demethylation.
PMID: 41781602
Cell Biol Toxicol · 2026
0.60