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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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FDFT1
farnesyl-diphosphate farnesyltransferase 1
Chromosome 8 · 8p23.1
NCBI Gene: 2222Ensembl: ENSG00000079459.14HGNC: HGNC:3629UniProt: A0A1W2PQ47
128PubMed Papers
1Diseases
0Drugs
4Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingendoplasmic reticulumendoplasmic reticulum membranesqualene synthase [NAD(P)H] activitySqualene synthase deficiency
✦AI Summary

FDFT1 (farnesyl-diphosphate farnesyltransferase 1) catalyzes the condensation of two farnesyl pyrophosphate molecules to form squalene, the first committed step of sterol biosynthesis 1. The enzyme operates through a two-step mechanism: formation of presqualene diphosphate intermediate followed by heterolysis, isomerization, and NADPH/NADH-dependent reduction [UniProt summary]. Beyond canonical cholesterol synthesis, FDFT1 plays unexpected roles in multiple cancers. In colorectal cancer, FDFT1 functions as a tumor suppressor, with downregulation correlating with malignant progression and poor prognosis 1. FDFT1 suppresses CRC proliferation by negatively regulating AKT/mTOR/HIF1α signaling 1. Conversely, in hepatocellular carcinoma and glioblastoma, elevated FDFT1 promotes malignancy through AKT pathway activation 2, 3. In breast cancer, FDFT1 inhibition by artemisitene induces apoptosis via the TNFR1/NF-κB/NEDD4 pathway 4. FDFT1 also regulates tissue-resident memory CD8+ T cell metabolism, with deletion promoting antitumor immunity 5. Clinically, FDFT1 dysfunction causes porokeratosis through germline and somatic alterations, responsive to statin therapy 6. FDFT1 expression is regulated by cholesterol levels and SREBP2, linking metabolic and transcriptional control 7, 3. Targeting FDFT1 represents a potential therapeutic strategy for multiple malignancies.

Sources cited
1
FDFT1 acts as tumor suppressor in colorectal cancer via AKT/mTOR/HIF1α pathway
PMID: 32313017
2
FDFT1 knockdown inhibits hepatocellular carcinoma through HNF4A/ALDOB/AKT1 axis and reduces cholesterol/bile acid
PMID: 39899681
3
FDFT1 deletion promotes tissue-resident memory T cell formation and antitumor immunity via coenzyme Q synthesis
PMID: 37648857
4
Bi-allelic FDFT1 alterations cause hereditary and non-hereditary porokeratosis responsive to statins
PMID: 38653249
5
FDFT1 expression in HCC regulated by cholesterol synthesis genes HMGCR, FDPS, and SREBP2
PMID: 36894036
6
FDFT1 maintains glioblastoma stem cells through SREBP2-mediated transcription and AKT pathway activation
PMID: 39707501
7
FDFT1 inhibition induces breast cancer apoptosis through TNFR1/NF-κB/NEDD4 pathway
PMID: 39461203
8
FDFT1 rs7001819 variant showed no association with obesity traits in Danish populations
PMID: 19245693
Disease Associationsⓘ1
Squalene synthase deficiencyUniProt
Pathogenic Variants4
NM_004462.5(FDFT1):c.899T>A (p.Leu300Ter)Likely pathogenic
Squalene synthase deficiency
★☆☆☆2019→ Residue 300
NM_004462.5(FDFT1):c.880-24_880-23delinsAGLikely pathogenic
Squalene synthase deficiency
★☆☆☆2018
NC_000008.11:g.11802586_11802601delLikely pathogenic
Squalene synthase deficiency
★☆☆☆2018
NC_000008.10:g.11667760_11787743del119984Likely pathogenic
Squalene synthase deficiency
★☆☆☆2018
View on ClinVar ↗
Related Genes
ACAT2Protein interaction100%ERG28Protein interaction100%CYP39A1Protein interaction99%FAXDC2Protein interaction97%DHDDSProtein interaction95%HMGCRProtein interaction95%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
FDFT1ACAT2ERG28CYP39A1FAXDC2DHDDSHMGCR
PROTEIN STRUCTURE
Preparing viewer…
PDB6PYW · 1.38 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.76LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.43 [1.16–1.76]
RankingsWhere FDFT1 stands among ~20K protein-coding genes
  • #3,651of 20,598
    Most Researched128 · top quartile
  • #3,722of 5,498
    Most Pathogenic Variants4
  • #16,396of 17,882
    Most Constrained (LOEUF)1.76
Genes detectedFDFT1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Fasting inhibits aerobic glycolysis and proliferation in colorectal cancer via the Fdft1-mediated AKT/mTOR/HIF1α pathway suppression.
PMID: 32313017
Nat Commun · 2020
1.00
2
Targeting FDFT1 Reduces Cholesterol and Bile Acid Production and Delays Hepatocellular Carcinoma Progression Through the HNF4A/ALDOB/AKT1 Axis.
PMID: 39899681
Adv Sci (Weinh) · 2025
0.90
3
Metabolic programs of T cell tissue residency empower tumour immunity.
PMID: 37648857
Nature · 2023
0.80
4
Gene-specific somatic epigenetic mosaicism of FDFT1 underlies a non-hereditary localized form of porokeratosis.
PMID: 38653249
Am J Hum Genet · 2024
0.70
5
A Therapeutically Targetable TAZ-TEAD2 Pathway Drives the Growth of Hepatocellular Carcinoma via ANLN and KIF23.
PMID: 36894036
Gastroenterology · 2023
0.60