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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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FGD3
FYVE, RhoGEF and PH domain containing 3
Chromosome 9 · 9q22.31
NCBI Gene: 89846Ensembl: ENSG00000127084.20HGNC: HGNC:16027UniProt: A8K9G1
19PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
Golgi apparatussmall GTPase bindinglamellipodiumcytoskeleton organizationanaphylaxisparasitic infectionbreast cancerskin disease
✦AI Summary

FGD3 (FYVE, RhoGEF and PH domain containing 3) is a guanine nucleotide exchange factor that specifically activates the Rho GTPase CDC42 by promoting GDP-to-GTP exchange 1. The protein contains canonical domains including RhoGEF, pleckstrin homology (PH), and FYVE domains that form the core structure characteristic of FGD1 family members 1. FGD3 promotes filopodia formation and regulates actin cytoskeleton organization through the CDC42-ARP2/3 signaling axis 12. Beyond cytoskeletal regulation, FGD3 serves as a key mediator of lytic cell death by coupling cell swelling to plasma membrane rupture in response to chemotherapy agents, facilitating the release of damage-associated molecular patterns and enhancing immunogenicity 2. Clinically, FGD3 functions as a tumor suppressor, with high expression correlating with improved prognosis in breast cancer patients, particularly after chemotherapy 342. In pancreatic cancer, FGD3 inhibits tumor progression by binding HSF4 to suppress p65 expression and inhibit NF-κB signaling 5. The gene shows tissue-diverse expression during embryogenesis, suggesting developmental roles, and is located on chromosome 9 1.

Sources cited
1
FGD3 is a guanine nucleotide exchange factor that activates CDC42, contains RhoGEF/PH/FYVE domains, promotes filopodia formation, and maps to chromosome 9q22
PMID: 10721717
2
FGD3 mediates lytic cell death through CDC42-ARP2/3 axis, enhances chemotherapy immunogenicity, and correlates with improved survival after chemotherapy
PMID: 41225536
3
FGD3 expression is a strong marker of good prognosis in breast cancer patients
PMID: 32620603
4
Lower FGD3 expression decreases disease-free survival and overall survival in young breast cancer patients
PMID: 31645624
5
FGD3 inhibits pancreatic cancer progression by binding HSF4 to suppress p65 expression and inhibit NF-κB signaling
PMID: 34975151
Disease Associationsⓘ20
anaphylaxisOpen Targets
0.31Weak
parasitic infectionOpen Targets
0.26Weak
breast cancerOpen Targets
0.09Suggestive
radiation-induced disorderOpen Targets
0.09Suggestive
skin diseaseOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.08Suggestive
cancerOpen Targets
0.04Suggestive
spinocerebellar ataxia type 32Open Targets
0.04Suggestive
tetragametic chimerismOpen Targets
0.04Suggestive
Isolated follicle stimulating hormone deficiencyOpen Targets
0.03Suggestive
Acute hepatic failureOpen Targets
0.02Suggestive
skeletal dysplasiaOpen Targets
0.02Suggestive
ventricular fibrillationOpen Targets
0.02Suggestive
temporal lobe epilepsyOpen Targets
0.02Suggestive
lymph node metastatic carcinomaOpen Targets
0.01Suggestive
ovarian cancerOpen Targets
0.01Suggestive
Invasive Breast CarcinomaOpen Targets
0.01Suggestive
head and neck squamous cell carcinomaOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
Aarskog-Scott syndrome, X-linkedOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FGD5Shared pathway100%FGD4Shared pathway100%CDC42Protein interaction97%FGD1Protein interaction90%GNG12Protein interaction90%FGD6Shared pathway83%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
53%
Liver
11%
Heart
5%
Brain
5%
Ovary
4%
Gene Interaction Network
Click a node to explore
FGD3FGD5FGD4CDC42FGD1GNG12FGD6
PROTEIN STRUCTURE
Preparing viewer…
PDB2COC · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.81LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.63 [0.49–0.81]
RankingsWhere FGD3 stands among ~20K protein-coding genes
  • #14,429of 20,598
    Most Researched19
  • #6,746of 17,882
    Most Constrained (LOEUF)0.81
Genes detectedFGD3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
PMID: 32620603
Anticancer Res · 2020
1.00
2
FGD3 mediates lytic cell death, enhancing efficacy and immunogenicity of chemotherapy agents in breast cancer.
PMID: 41225536
J Exp Clin Cancer Res · 2025
0.90
3
Isolation, characterization, and mapping of the mouse Fgd3 gene, a new Faciogenital Dysplasia (FGD1; Aarskog Syndrome) gene homologue.
PMID: 10721717
Gene · 2000
0.80
4
FGD3 binds with HSF4 to suppress p65 expression and inhibit pancreatic cancer progression.
PMID: 34975151
Oncogene · 2022
0.70
5
Expression of FGD3 gene as prognostic factor in young breast cancer patients.
PMID: 31645624
Sci Rep · 2019
0.60