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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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FITM2
fat storage inducing transmembrane protein 2
Chromosome 20 Β· 20q13.12
NCBI Gene: 128486Ensembl: ENSG00000197296.6HGNC: HGNC:16135UniProt: Q8N6M3
24PubMed Papers
21Diseases
0Drugs
11Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindinglipid droplet formationfatty-acyl-CoA catabolic processcoenzyme A diphosphatase activitySiddiqi syndromeatrial fibrillationtype 2 diabetes mellitusulcerative colitis
✦AI Summary

FITM2 (fat storage inducing transmembrane protein 2) is an endoplasmic reticulum (ER) integral membrane protein that functions as a fatty acyl-CoA diphosphatase, hydrolyzing fatty acyl-CoA substrates to yield acyl-4'-phosphopantetheine and adenosine 3',5'-bisphosphate 1. The protein preferentially processes unsaturated long-chain acyl-CoA substrates and plays a crucial role in lipid droplet biogenesis and ER homeostasis 1. FITM2 is essential for proper VLDL assembly in hepatocytes, as deficiency results in secretion of triglyceride-depleted VLDL particles and accumulation of triglycerides in the ER, leading to ER stress 2. The protein contributes to lipid partitioning between cytosolic lipid droplets and VLDL particles, particularly when triglyceride synthesis is stimulated 2. FITM2 also functions in cancer cell immune evasion, being required for maintaining cell fitness after interferon-Ξ³ exposure 3. Homozygous loss-of-function mutations cause Siddiqi syndrome, characterized by deafness, dystonia, motor regression, and neuropsychiatric symptoms 45. Hypomorphic mutations can cause hereditary spastic paraplegia, expanding the clinical spectrum associated with FITM2 deficiency 6. The protein's expression is regulated by peroxisome proliferator-activated receptors (PPARs), linking lipid uptake to storage capacity regulation 7.

Sources cited
1
FITM2 functions as fatty acyl-CoA diphosphatase with substrate preferences for unsaturated long-chain acyl-CoAs
PMID: 32915949
2
FITM2 deficiency causes ER triglyceride accumulation, ER stress, and impaired VLDL lipidation
PMID: 39426520
3
FITM2 is required for cancer cell fitness after interferon-Ξ³ exposure and immune evasion
PMID: 32968282
4
Homozygous FITM2 mutations cause Siddiqi syndrome with deafness, dystonia, and motor regression
PMID: 28067622
5
Novel FITM2 mutations expand Siddiqi syndrome clinical spectrum including neuropsychiatric symptoms
PMID: 39731388
6
Hypomorphic FITM2 mutations cause hereditary spastic paraplegia
PMID: 39974099
7
FITM2 expression is regulated by PPARs, linking lipid metabolism to storage capacity
PMID: 28735095
Disease Associationsβ“˜21
Siddiqi syndromeOpen Targets
0.73Strong
atrial fibrillationOpen Targets
0.49Moderate
type 2 diabetes mellitusOpen Targets
0.41Moderate
ulcerative colitisOpen Targets
0.04Suggestive
hepatocellular carcinomaOpen Targets
0.03Suggestive
hereditary spastic paraplegiaOpen Targets
0.01Suggestive
cardiomyopathyOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
breast carcinomaOpen Targets
0.01Suggestive
Sensory neuropathyOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
deafness dystonia syndromeOpen Targets
0.01Suggestive
diabetes mellitusOpen Targets
0.01Suggestive
ichthyosisOpen Targets
0.01Suggestive
deafnessOpen Targets
0.01Suggestive
myocardial infarctionOpen Targets
0.01Suggestive
Mohr-Tranebjaerg syndromeOpen Targets
0.01Suggestive
metabolic diseaseOpen Targets
0.01Suggestive
obesityOpen Targets
0.01Suggestive
lipodystrophyOpen Targets
0.01Suggestive
Siddiqi syndromeUniProt
Pathogenic Variants11
NM_001080472.4(FITM2):c.367C>T (p.Gln123Ter)Pathogenic
Siddiqi syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 123
NM_001080472.4(FITM2):c.343G>T (p.Glu115Ter)Likely pathogenic
Siddiqi syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 115
NM_001080472.4(FITM2):c.21C>A (p.Cys7Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 7
NM_001080472.4(FITM2):c.576del (p.Val193fs)Likely pathogenic
Siddiqi syndrome
β˜…β˜†β˜†β˜†2021β†’ Residue 193
NM_001080472.4(FITM2):c.1A>T (p.Met1Leu)Likely pathogenic
Siddiqi syndrome
β˜…β˜†β˜†β˜†2021β†’ Residue 1
NM_001080472.4(FITM2):c.1A>G (p.Met1Val)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2020β†’ Residue 1
NM_001080472.4(FITM2):c.200G>A (p.Trp67Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2020β†’ Residue 67
NM_001080472.4(FITM2):c.538C>T (p.Arg180Ter)Likely pathogenic
FITM2-related disorder
β˜†β˜†β˜†β˜†2024β†’ Residue 180
NM_001080472.4(FITM2):c.4G>T (p.Glu2Ter)Pathogenic
Siddiqi syndrome
β˜†β˜†β˜†β˜†2019β†’ Residue 2
NM_001080472.4(FITM2):c.39dup (p.Thr14fs)Pathogenic
Siddiqi syndrome
β˜†β˜†β˜†β˜†2019β†’ Residue 14
NM_001080472.4(FITM2):c.652C>T (p.Gln218Ter)Pathogenic
Siddiqi syndrome
β˜†β˜†β˜†β˜†2019β†’ Residue 218
View on ClinVar β†—
Related Genes
R3HDMLProtein interaction78%BSCL2Protein interaction61%FITM1Shared pathway46%LDAHShared pathway30%ADIGShared pathway27%PNPLA2Shared pathway19%
Tissue Expression6 tissues
Heart
100%
Liver
7%
Brain
7%
Ovary
5%
Lung
5%
Bone Marrow
2%
Gene Interaction Network
Click a node to explore
FITM2R3HDMLBSCL2FITM1LDAHADIGPNPLA2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q8N6M3
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.99LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.65 [0.44–0.99]
RankingsWhere FITM2 stands among ~20K protein-coding genes
  • #13,190of 20,598
    Most Researched24
  • #2,802of 5,498
    Most Pathogenic Variants11
  • #9,489of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedFITM2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Emerging dimensions of autophagy in melanoma.
PMID: 38497492
Autophagy Β· 2024
1.00
2
Functional genomic landscape of cancer-intrinsic evasion of killing by T cells.
PMID: 32968282
Nature Β· 2020
0.90
3
FITM2 deficiency results in ER lipid accumulation, ER stress, and reduced apolipoprotein B lipidation and VLDL triglyceride secretion inΒ vitro and in mouse liver.
PMID: 39426520
Mol Metab Β· 2024
0.80
4
Partial loss of
PMID: 39974099
medRxiv Β· 2025
0.70
5
The biogenesis of lipid droplets: Lipids take center stage.
PMID: 31351098
Prog Lipid Res Β· 2019
0.60