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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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FOXE3
forkhead box E3
Chromosome 1 Β· 1p33
NCBI Gene: 2301Ensembl: ENSG00000186790.6HGNC: HGNC:3808UniProt: A0A0A1EII5
37PubMed Papers
23Diseases
0Drugs
33Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
transcription by RNA polymerase IIDNA bindingDNA-binding transcription factor activityeye developmentcongenital primary aphakiacataract 34 multiple typesPosterior polar cataractOcular anterior segment dysgenesis
✦AI Summary

FOXE3 (forkhead box E3) is a transcription factor essential for lens development and eye morphogenesis. The protein functions as a DNA-binding transcription factor that controls lens epithelial cell growth through regulation of proliferation, apoptosis, and cell cycle progression 1. During lens development, FOXE3 is expressed from the start of lens placode induction and becomes restricted to anterior proliferating cells when lens fiber differentiation begins 1. The protein is crucial for lens vesicle closure and subsequent separation from the ectoderm, promoting survival and proliferation while preventing premature differentiation in lens epithelium 1. FOXE3 mutations cause severe ocular developmental anomalies with distinct genotype-phenotype correlations. Recessive mutations typically result in congenital primary aphakia, sclerocornea, and microphthalmia, while dominant mutations cause anterior segment dysgenesis 23. The sclerocornea-microphthalmia-aphakia complex represents the most severe phenotype, characterized by absent lens, opaque cornea, and small eyes 34. Comprehensive mutation analyses have identified over 50 variants in FOXE3, establishing it as a major gene for congenital eye malformations 5. These findings demonstrate FOXE3's critical role in orchestrating early eye development and maintaining lens epithelial homeostasis.

Sources cited
1
FOXE3 is essential for lens vesicle closure, promotes lens epithelial proliferation and survival while preventing premature differentiation
PMID: 10652278
2
FOXE3 mutations show genotype-phenotype correlations with recessive mutations causing more severe phenotypes than dominant mutations
PMID: 29136273
3
FOXE3 mutations cause sclerocornea-microphthalmia-aphakia complex, a severe ocular malformation
PMID: 29878917
4
Congenital primary aphakia associated with FOXE3 mutations presents with characteristic corneal and glaucomatous features
PMID: 35051625
5
Over 50 variants in FOXE3 have been identified, establishing it as a major gene for congenital eye defects
PMID: 29314435
Disease Associationsβ“˜23
congenital primary aphakiaOpen Targets
0.82Strong
cataract 34 multiple typesOpen Targets
0.72Strong
Posterior polar cataractOpen Targets
0.67Moderate
Ocular anterior segment dysgenesisOpen Targets
0.64Moderate
Familial ocular anterior segment mesenchymal dysgenesisOpen Targets
0.63Moderate
anterior segment dysgenesisOpen Targets
0.59Moderate
cataractOpen Targets
0.56Moderate
familial thoracic aortic aneurysm and aortic dissectionOpen Targets
0.51Moderate
Peters anomalyOpen Targets
0.47Moderate
Developmental cataractOpen Targets
0.46Moderate
neurodegenerative diseaseOpen Targets
0.45Moderate
microphthalmiaOpen Targets
0.39Weak
aortic aneurysmOpen Targets
0.36Weak
Aortic dissectionOpen Targets
0.36Weak
marfan syndrome/loeys-dietz syndrome/familial thoracic aortic aneurysms and dissectionsOpen Targets
0.36Weak
lens diseaseOpen Targets
0.34Weak
Abnormality of the cardiovascular systemOpen Targets
0.19Weak
Rare disease with thoracic aortic aneurysm and aortic dissectionOpen Targets
0.12Weak
early-onset non-syndromic cataractOpen Targets
0.11Weak
Total congenital cataractOpen Targets
0.11Weak
Anterior segment dysgenesis 2UniProt
Aortic aneurysm, familial thoracic 11UniProt
Cataract 34, multiple typesUniProt
Pathogenic Variants33
NM_012186.3(FOXE3):c.720C>A (p.Cys240Ter)Pathogenic
Congenital primary aphakia|not provided|Anterior segment dysgenesis|Irido-corneo-trabecular dysgenesis
β˜…β˜…β˜†β˜†2025β†’ Residue 240
NM_012186.3(FOXE3):c.232G>A (p.Ala78Thr)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis|Congenital primary aphakia|not provided|Cardiovascular phenotype
β˜…β˜…β˜†β˜†2025β†’ Residue 78
NM_012186.3(FOXE3):c.632C>A (p.Ser211Ter)Pathogenic
Anterior segment dysgenesis;Congenital primary aphakia|Congenital primary aphakia
β˜…β˜…β˜†β˜†2025β†’ Residue 211
NM_012186.3(FOXE3):c.145G>T (p.Gly49Ter)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis|Congenital primary aphakia
β˜…β˜…β˜†β˜†2022β†’ Residue 49
NM_012186.3(FOXE3):c.343_347del (p.Trp115fs)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis
β˜…β˜†β˜†β˜†2025β†’ Residue 115
NM_012186.3(FOXE3):c.472G>C (p.Gly158Arg)Pathogenic
Anterior segment dysgenesis;Congenital primary aphakia
β˜…β˜†β˜†β˜†2025β†’ Residue 158
NM_012186.3(FOXE3):c.705del (p.Glu236fs)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis
β˜…β˜†β˜†β˜†2024β†’ Residue 236
NM_012186.3(FOXE3):c.56_59del (p.Leu19fs)Pathogenic
Anterior segment dysgenesis;Congenital primary aphakia
β˜…β˜†β˜†β˜†2024β†’ Residue 19
NM_012186.3(FOXE3):c.21_24del (p.Met7fs)Pathogenic
Congenital primary aphakia|Anterior segment dysgenesis;Congenital primary aphakia
β˜…β˜†β˜†β˜†2024β†’ Residue 7
NM_012186.3(FOXE3):c.535del (p.Ala179fs)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis
β˜…β˜†β˜†β˜†2024β†’ Residue 179
NM_012186.3(FOXE3):c.473G>A (p.Gly158Asp)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 158
NM_012186.3(FOXE3):c.291C>G (p.Ile97Met)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis|Congenital primary aphakia
β˜…β˜†β˜†β˜†2023β†’ Residue 97
NM_012186.3(FOXE3):c.222C>G (p.Tyr74Ter)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis
β˜…β˜†β˜†β˜†2023β†’ Residue 74
NM_012186.3(FOXE3):c.873dup (p.Pro292fs)Pathogenic
Congenital primary aphakia
β˜…β˜†β˜†β˜†2023β†’ Residue 292
NM_012186.3(FOXE3):c.706G>T (p.Glu236Ter)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis
β˜…β˜†β˜†β˜†2023β†’ Residue 236
NM_012186.3(FOXE3):c.387C>G (p.Phe129Leu)Likely pathogenic
Congenital primary aphakia;Anterior segment dysgenesis
β˜…β˜†β˜†β˜†2023β†’ Residue 129
NM_012186.3(FOXE3):c.724del (p.Ala242fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 242
NM_012186.3(FOXE3):c.289A>G (p.Ile97Val)Likely pathogenic
Congenital primary aphakia
β˜…β˜†β˜†β˜†2022β†’ Residue 97
NM_012186.3(FOXE3):c.393_419delinsCGGCCAGTGCTCCTTTATCCATGGGAGCTGGGAATAATCCCAGAGAGCAGACAACCTGCTGCTCAGATACATTCACACAAGTGTGTACACACACATGCCCAGCCCATCTCGTCTCTACCAGGCTGAGATGCAGGAGATGGCATTTGACTAGGCCTACTATGTGCACAGCTATGGCTGAATCACTTCCTTTTTAAAACAAAATTGTGTTAGCCACTAATCCTGCTGGAGAATCACTTCCTAATCCCATTTCATGAACTTCTGATTGATGTCTCACAAGGAGGTTCACCC (p.Lys131_Gly140delinsAsnGlyGlnCysSerPheIleHisGlySerTrpGluTer)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis
β˜…β˜†β˜†β˜†2022β†’ Residue 131
NM_012186.3(FOXE3):c.555dup (p.Phe186fs)Pathogenic
Congenital primary aphakia;Anterior segment dysgenesis
β˜…β˜†β˜†β˜†2021β†’ Residue 186
View on ClinVar β†—
Related Genes
GPR161Protein interaction96%PITX3Protein interaction94%PAX6Protein interaction72%WNT2BShared pathway25%THRAShared pathway19%FOXE1Shared pathway18%
Tissue Expression6 tissues
Brain
100%
Lung
7%
Bone Marrow
7%
Ovary
0%
Heart
0%
Liver
0%
Gene Interaction Network
Click a node to explore
FOXE3GPR161PITX3PAX6WNT2BTHRAFOXE1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q13461
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.94LoF Tolerant
pLIβ“˜
0.12Tolerant
Observed/Expected LoF2.77 [0.37–1.94]
RankingsWhere FOXE3 stands among ~20K protein-coding genes
  • #10,624of 20,598
    Most Researched37
  • #1,740of 5,498
    Most Pathogenic Variants33
  • #17,522of 17,882
    Most Constrained (LOEUF)1.94
Genes detectedFOXE3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Human FOX gene family (Review).
PMID: 15492844
Int J Oncol Β· 2004
1.00
2
FOXE3 mutations: genotype-phenotype correlations.
PMID: 29136273
Clin Genet Β· 2018
0.90
3
Mutation update of transcription factor genes FOXE3, HSF4, MAF, and PITX3 causing cataracts and other developmental ocular defects.
PMID: 29314435
Hum Mutat Β· 2018
0.80
4
Anophthalmia and microphthalmia.
PMID: 18039390
Orphanet J Rare Dis Β· 2007
0.70
5
Congenital primary aphakia.
PMID: 35051625
J AAPOS Β· 2022
0.60