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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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GALNT3
polypeptide N-acetylgalactosaminyltransferase 3
Chromosome 2 Β· 2q24.3
NCBI Gene: 2591Ensembl: ENSG00000115339.16HGNC: HGNC:4125UniProt: Q14435
87PubMed Papers
21Diseases
0Drugs
67Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
Golgi apparatuspolypeptide N-acetylgalactosaminyltransferase activitycalcium ion bindingmanganese ion bindingfamilial hyperphosphatemic tumoral calcinosis/hyperphosphatemic hyperostosis syndrometumoral calcinosis, hyperphosphatemic, familial, 3type 2 diabetes mellitusintelligence
✦AI Summary

GALNT3 encodes polypeptide N-acetylgalactosaminyltransferase 3, an enzyme that catalyzes the initial step in O-linked glycosylation by transferring N-acetyl-D-galactosamine to serine or threonine residues on target proteins 1. The enzyme's primary function involves post-translational modification of key substrates including fibroblast growth factor 23 (FGF23), where GALNT3-mediated O-glycosylation prevents proteolytic cleavage and enables secretion of biologically active intact FGF23 1. This mechanism is crucial for phosphate homeostasis, as FGF23 regulates blood phosphate levels by inhibiting renal phosphate reabsorption and vitamin D synthesis 2. GALNT3 expression is regulated by the FGFR1c-MEK/ERK signaling pathway in response to high phosphate levels, forming a feedback mechanism for phosphate sensing 3. Disease relevance includes hyperphosphatemic familial tumoral calcinosis caused by GALNT3 deficiency, and associations with osteoporosis where reduced GALNT3 expression correlates with decreased bone mineral density 45. Additionally, GALNT3 has been implicated in male infertility and cancer progression, including intrahepatic cholangiocarcinoma where it promotes metastasis 67. The enzyme's role in FGF23 regulation makes it clinically significant for understanding and treating phosphate homeostasis disorders 2.

Sources cited
1
GALNT3 O-glycosylates FGF23 to prevent proteolysis and enable secretion of biologically active hormone
PMID: 33338030
2
GALNT3 expression is regulated by FGFR1c-MEK/ERK signaling in response to high phosphate levels
PMID: 35288870
3
GALNT3 is key molecule controlling FGF23 production for phosphate homeostasis regulation
PMID: 30449549
4
Reduced GALNT3 expression correlates with decreased bone mineral density in osteoporosis
PMID: 30004557
5
GALNT3 gene polymorphisms are associated with osteoporosis risk in Chinese Han population
PMID: 35414641
6
GALNT3 variants identified in patients with primary male infertility
PMID: 39267058
7
GALNT3 promotes proliferation and metastasis in intrahepatic cholangiocarcinoma
PMID: 33052627
Disease Associationsβ“˜21
familial hyperphosphatemic tumoral calcinosis/hyperphosphatemic hyperostosis syndromeOpen Targets
0.80Strong
tumoral calcinosis, hyperphosphatemic, familial, 3Open Targets
0.60Moderate
type 2 diabetes mellitusOpen Targets
0.42Moderate
intelligenceOpen Targets
0.40Weak
hyperphosphatemiaOpen Targets
0.37Weak
osteoporosisOpen Targets
0.34Weak
diabetes mellitusOpen Targets
0.32Weak
autism spectrum disorderOpen Targets
0.24Weak
attention deficit hyperactivity disorderOpen Targets
0.22Weak
alcohol drinkingOpen Targets
0.20Weak
genetic disorderOpen Targets
0.19Weak
neurodegenerative diseaseOpen Targets
0.19Weak
familial tumoral calcinosisOpen Targets
0.16Weak
placental retentionOpen Targets
0.13Weak
azoospermiaOpen Targets
0.10Weak
retinal perforationOpen Targets
0.09Suggestive
retinal detachmentOpen Targets
0.08Suggestive
partial chromosome Y deletionOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.08Suggestive
spermatogenic failure 65Open Targets
0.08Suggestive
Tumoral calcinosis, hyperphosphatemic, familial, 1UniProt
Pathogenic Variants67
NM_004482.4(GALNT3):c.985G>A (p.Gly329Arg)Pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2026β†’ Residue 329
NM_004482.4(GALNT3):c.1097T>G (p.Leu366Arg)Likely pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2025β†’ Residue 366
NM_004482.4(GALNT3):c.746_749del (p.Val249fs)Pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2025β†’ Residue 249
NM_004482.4(GALNT3):c.1102dup (p.Ser368fs)Pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2025β†’ Residue 368
NM_004482.4(GALNT3):c.484C>T (p.Arg162Ter)Pathogenic
Tumoral calcinosis, hyperphosphatemic, familial, 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 162
NM_004482.4(GALNT3):c.260_266del (p.Arg87fs)Pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2025β†’ Residue 87
NM_004482.4(GALNT3):c.516-2A>TPathogenic
Tumoral calcinosis, hyperphosphatemic, familial, 1|not provided
β˜…β˜…β˜†β˜†2025
NM_004482.4(GALNT3):c.1312C>T (p.Arg438Cys)Pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2025β†’ Residue 438
NM_004482.4(GALNT3):c.892del (p.Tyr298fs)Pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2024β†’ Residue 298
NM_004482.4(GALNT3):c.1524+5G>APathogenic
Tumoral calcinosis, hyperphosphatemic, familial, 1|not provided
β˜…β˜…β˜†β˜†2024
NM_004482.4(GALNT3):c.516-2A>GPathogenic
Tumoral calcinosis, hyperphosphatemic, familial, 1|not provided|Malignant tumor of urinary bladder
β˜…β˜…β˜†β˜†2024
NM_004482.4(GALNT3):c.803dup (p.Thr269fs)Pathogenic
Tumoral calcinosis, hyperphosphatemic, familial, 1|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 269
NM_004482.4(GALNT3):c.1696C>T (p.Gln566Ter)Pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2024β†’ Residue 566
NM_004482.4(GALNT3):c.1681T>A (p.Cys561Ser)Likely pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2024β†’ Residue 561
NM_004482.4(GALNT3):c.1074-1G>CLikely pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2024
NM_004482.4(GALNT3):c.149C>G (p.Ser50Ter)Pathogenic
Tumoral calcinosis, hyperphosphatemic, familial, 1|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 50
NM_004482.4(GALNT3):c.1524+1G>APathogenic
Tumoral calcinosis, hyperphosphatemic, familial, 1|not provided
β˜…β˜…β˜†β˜†2024
NM_004482.4(GALNT3):c.689-2A>GLikely pathogenic
not provided|Tumoral calcinosis, hyperphosphatemic, familial, 1
β˜…β˜…β˜†β˜†2024
NM_004482.4(GALNT3):c.1626+1G>APathogenic
Tumoral calcinosis, hyperphosphatemic, familial, 1|not provided
β˜…β˜…β˜†β˜†2023
NM_004482.4(GALNT3):c.505C>T (p.Arg169Ter)Pathogenic
Tumoral calcinosis, hyperphosphatemic, familial, 1|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 169
View on ClinVar β†—
Related Genes
KLProtein interaction100%FGF23Protein interaction99%PHEXProtein interaction98%C1GALT1Protein interaction98%PTHProtein interaction98%C1GALT1C1Protein interaction97%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
7%
Brain
4%
Ovary
4%
Liver
2%
Heart
0%
Gene Interaction Network
Click a node to explore
GALNT3KLFGF23PHEXC1GALT1PTHC1GALT1C1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q14435
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.80LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.61 [0.47–0.80]
RankingsWhere GALNT3 stands among ~20K protein-coding genes
  • #5,478of 20,598
    Most Researched87
  • #1,085of 5,498
    Most Pathogenic Variants67 Β· top quartile
  • #6,702of 17,882
    Most Constrained (LOEUF)0.80
Genes detectedGALNT3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
FGF23 signalling and physiology.
PMID: 33338030
J Mol Endocrinol Β· 2021
1.00
2
Phosphate-Sensing.
PMID: 35288870
Adv Exp Med Biol Β· 2022
0.90
3
Whole exome sequencing analysis of 167 men with primary infertility.
PMID: 39267058
BMC Med Genomics Β· 2024
0.80
4
Phosphate homeostasis disorders.
PMID: 30449549
Best Pract Res Clin Endocrinol Metab Β· 2018
0.70
5
Research on correlation between GALNT3 gene and osteoporosis.
PMID: 30004557
Eur Rev Med Pharmacol Sci Β· 2018
0.60