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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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GBA2
glucosylceramidase beta 2
Chromosome 9 Β· 9p13.3
NCBI Gene: 57704Ensembl: ENSG00000070610.15HGNC: HGNC:18986UniProt: Q9HCG7
73PubMed Papers
21Diseases
0Drugs
45Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
beta-glucosidase activityglucosylceramide catabolic processcentral nervous system neuron developmentglycoside catabolic processAutosomal recessive spastic paraplegia type 46hereditary spastic paraplegia 46Spastic paraplegiahereditary spastic paraplegia
✦AI Summary

GBA2 is a non-lysosomal glucosylceramidase that catalyzes hydrolysis of glucosylceramides to glucose and ceramides 1. Beyond this primary function, GBA2 exhibits glucosyltransferase activity, transferring glucose from glucosylceramide to cholesterol and participating in bile acid metabolism 2. The enzyme localizes to the endoplasmic reticulum and Golgi apparatus, where it regulates glycosphingolipid catabolism affecting cellular signaling and membrane dynamics 3. Loss of GBA2 function causes glucosylceramide accumulation and impairs neuronal development. Biallelic GBA2 mutations cause spastic paraplegia type 46 (SPG46), an autosomal recessive hereditary spastic paraplegia presenting with progressive spasticity, ataxia, and neurological decline 4. Patients exhibit variable phenotypes including cerebellar ataxia and Marinesco-SjΓΆgren-like features 5. SPG46-associated mutations predominantly reduce GBA2 catalytic activity and disrupt protein-protein interactions 6. GBA2 loss selectively affects F-actin dynamics and neurite outgrowth in cerebellar neurons, mechanistically linking glycosphingolipid breakdown to neurological dysfunction 6. Beyond neurological disease, GBA2 suppresses melanoma progression by promoting ceramide-mediated endoplasmic reticulum stress and apoptosis, with reduced GBA2 expression in melanoma tissue 7.

Sources cited
1
GBA2 catalyzes hydrolysis of glucosylceramide to glucose and ceramide; mutations associated with HSP and ARCA
PMID: 29234271
2
GBA2 is non-lysosomal, ubiquitously expressed, with elevated expression in CNS; involved in neuronal development and homeostasis
PMID: 26603294
3
GBA2 localizes to ER and Golgi; genetic defects cause spastic paraplegia and cerebellar ataxia
PMID: 27115290
4
GBA2 mutations cause SPG46 with spastic-ataxia, scoliosis, intellectual decline, and cataracts
PMID: 34251556
5
SPG46 is early-onset autosomal recessive HSP linked to biallelic GBA2 mutations with variable phenotypes; GBA2 activity measurement in blood cells
PMID: 38334933
6
SPG46 mutations cause GBA2 loss of activity; GBA2 inhibition affects F-actin dynamics and neurite outgrowth in cerebellar neurons
PMID: 30662006
7
GBA2 promotes ceramide generation and ER stress-induced apoptosis; suppresses melanoma tumor growth; downregulated in melanoma
PMID: 23073830
Disease Associationsβ“˜21
Autosomal recessive spastic paraplegia type 46Open Targets
0.81Strong
hereditary spastic paraplegia 46Open Targets
0.75Strong
Spastic paraplegiaOpen Targets
0.55Moderate
hereditary spastic paraplegiaOpen Targets
0.49Moderate
autosomal recessive cerebellar ataxia with late-onset spasticityOpen Targets
0.37Weak
complex hereditary spastic paraplegiaOpen Targets
0.37Weak
Neurodevelopmental disorderOpen Targets
0.33Weak
type 2 diabetes mellitusOpen Targets
0.32Weak
Parkinson diseaseOpen Targets
0.27Weak
CEP290-related ciliopathyOpen Targets
0.27Weak
Alzheimer diseaseOpen Targets
0.26Weak
neurodegenerative diseaseOpen Targets
0.26Weak
lysosomal storage diseaseOpen Targets
0.26Weak
multiple sclerosisOpen Targets
0.26Weak
migraine disorderOpen Targets
0.24Weak
genetic disorderOpen Targets
0.19Weak
Intellectual disabilityOpen Targets
0.15Weak
hereditary spastic paraplegia 5AOpen Targets
0.15Weak
polyneuropathyOpen Targets
0.15Weak
Spastic paraparesisOpen Targets
0.15Weak
Spastic paraplegia 46, autosomal recessiveUniProt
Pathogenic Variants45
NM_020944.3(GBA2):c.1720C>T (p.Arg574Ter)Pathogenic
Hereditary spastic paraplegia 46|Spastic paraplegia
β˜…β˜…β˜†β˜†2025β†’ Residue 574
NM_020944.3(GBA2):c.2608C>T (p.Arg870Ter)Likely pathogenic
Hereditary spastic paraplegia 46|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 870
NM_020944.3(GBA2):c.1582+2T>GLikely pathogenic
Hereditary spastic paraplegia 46|Spastic paraplegia
β˜…β˜…β˜†β˜†2024
NM_020944.3(GBA2):c.1888C>T (p.Arg630Trp)Pathogenic
Hereditary spastic paraplegia 46|Hereditary spastic paraplegia|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 630
NM_020944.3(GBA2):c.700C>T (p.Arg234Ter)Pathogenic
Hereditary spastic paraplegia 46|not provided|Spastic paraplegia
β˜…β˜…β˜†β˜†2024β†’ Residue 234
NM_020944.3(GBA2):c.2202del (p.Tyr735fs)Pathogenic
Spastic paraplegia|GBA2-related disorder|Hereditary spastic paraplegia 46
β˜…β˜…β˜†β˜†2024β†’ Residue 735
NM_020944.3(GBA2):c.1018C>T (p.Arg340Ter)Pathogenic
Hereditary spastic paraplegia 46|Spastic paraplegia
β˜…β˜…β˜†β˜†2020β†’ Residue 340
NM_020944.3(GBA2):c.2618G>A (p.Arg873His)Pathogenic
Hereditary spastic paraplegia 46|Hereditary spastic paraplegia
β˜…β˜…β˜†β˜†2019β†’ Residue 873
NM_020944.3(GBA2):c.323_327del (p.Leu108fs)Pathogenic
Hereditary spastic paraplegia 46
β˜…β˜†β˜†β˜†2025β†’ Residue 108
NM_020944.3(GBA2):c.1687+1G>ALikely pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2024
NM_020944.3(GBA2):c.2635C>T (p.Arg879Trp)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2024β†’ Residue 879
NM_020944.3(GBA2):c.1351C>T (p.Arg451Ter)Pathogenic
Hereditary spastic paraplegia 46
β˜…β˜†β˜†β˜†2024β†’ Residue 451
NM_020944.3(GBA2):c.1528_1529del (p.Met510fs)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2024β†’ Residue 510
NM_020944.3(GBA2):c.812_813del (p.Phe271fs)Likely pathogenic
Hereditary spastic paraplegia 46
β˜…β˜†β˜†β˜†2024β†’ Residue 271
NM_020944.3(GBA2):c.2636G>A (p.Arg879Gln)Likely pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2023β†’ Residue 879
NM_020944.3(GBA2):c.2101C>T (p.Gln701Ter)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2023β†’ Residue 701
NM_020944.3(GBA2):c.1111C>T (p.Gln371Ter)Pathogenic
Spastic paraplegia
β˜…β˜†β˜†β˜†2023β†’ Residue 371
NM_020944.3(GBA2):c.715dup (p.Tyr239fs)Likely pathogenic
Hereditary spastic paraplegia 46|CEP290-related ciliopathy
β˜…β˜†β˜†β˜†2023β†’ Residue 239
NM_020944.3(GBA2):c.2025del (p.Tyr676fs)Pathogenic
Hereditary spastic paraplegia 46
β˜…β˜†β˜†β˜†2023β†’ Residue 676
NM_020944.3(GBA2):c.2192G>A (p.Trp731Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 731
View on ClinVar β†—
Related Genes
ACER2Protein interaction97%ACER1Protein interaction97%CERS6Protein interaction97%SGMS1Protein interaction97%CERS4Protein interaction97%CERS5Protein interaction96%
Tissue Expression6 tissues
Heart
100%
Liver
86%
Lung
86%
Ovary
56%
Brain
46%
Bone Marrow
29%
Gene Interaction Network
Click a node to explore
GBA2ACER2ACER1CERS6SGMS1CERS4CERS5
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9HCG7
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.77LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.63 [0.51–0.77]
RankingsWhere GBA2 stands among ~20K protein-coding genes
  • #6,464of 20,598
    Most Researched73
  • #1,425of 5,498
    Most Pathogenic Variants45
  • #6,270of 17,882
    Most Constrained (LOEUF)0.77
Genes detectedGBA2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Spastic paraplegia type 46: novel and recurrent GBA2 gene variants in a compound heterozygous Italian patient with spastic ataxia phenotype.
PMID: 34251556
Neurol Sci Β· 2021
1.00
2
The Enigmatic Role of GBA2 in Controlling Locomotor Function.
PMID: 29234271
Front Mol Neurosci Β· 2017
0.90
3
Current and Novel Aspects on the Non-lysosomal Ξ²-Glucosylceramidase GBA2.
PMID: 26603294
Neurochem Res Β· 2016
0.80
4
Bacterial Ξ²-Glucosidase Reveals the Structural and Functional Basis of Genetic Defects in Human Glucocerebrosidase 2 (GBA2).
PMID: 27115290
ACS Chem Biol Β· 2016
0.70
5
Hereditary spastic paraparesis type 46 (SPG46): new GBA2 variants in a large Italian case series and review of the literature.
PMID: 38334933
Neurogenetics Β· 2024
0.60