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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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GLDC
glycine decarboxylase
Chromosome 9 Β· 9p24.1
NCBI Gene: 2731Ensembl: ENSG00000178445.11HGNC: HGNC:4313UniProt: P23378
71PubMed Papers
21Diseases
0Drugs
489Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
glycine dehydrogenase (decarboxylating) activityglycine catabolic processmitochondrionprotein homodimerization activityglycine encephalopathyglycine encephalopathy 1genetic disorderneurodegenerative disease
✦AI Summary

GLDC (glycine decarboxylase) is a mitochondrial enzyme that serves as the P protein component of the glycine cleavage system, catalyzing the degradation of glycine by binding its alpha-amino group through a pyridoxal phosphate cofactor and releasing CO2 1. The gene spans at least 135 kb with 25 exons and is expressed in liver, kidney, brain, and placenta 1. GLDC functions in glycine catabolism and one-carbon metabolism, with deficiency leading to nonketotic hyperglycinemia (NKH), a severe neurological disorder caused by glycine accumulation 23. In NKH, 80% of cases involve GLDC mutations, with over 484 unique mutations identified 2. Beyond metabolic function, GLDC exhibits diverse physiological roles: it negatively regulates antiviral responses, with higher expression increasing susceptibility to severe influenza 4, and protects against cisplatin-induced kidney injury by modulating UCP1-mediated pathways 5. GLDC also demonstrates oncogenic properties in cancer, promoting cell proliferation and tumorigenesis 67, while playing protective roles in liver ischemia-reperfusion injury by inhibiting macrophage recruitment 8. Gene therapy approaches using AAV vectors show promise for treating NKH by restoring GLDC function 3.

Sources cited
1
GLDC structure, expression pattern, and role in glycine cleavage system
PMID: 10798358
2
GLDC mutations cause 80% of NKH cases with 484 unique mutations identified
PMID: 27362913
3
GLDC deficiency causes glycine accumulation and folate metabolism disruption in NKH
PMID: 38761651
4
GLDC negatively regulates antiviral responses and influences influenza susceptibility
PMID: 30498026
5
GLDC protects against cisplatin-induced kidney injury via UCP1 pathway
PMID: 40010632
6
GLDC promotes cancer cell proliferation and tumorigenesis
PMID: 31773974
7
GLDC acts as oncogene in triple-negative breast cancer
PMID: 36275705
8
GLDC protects against liver ischemia-reperfusion injury by inhibiting macrophage recruitment
PMID: 40617371
Disease Associationsβ“˜21
glycine encephalopathyOpen Targets
0.84Strong
glycine encephalopathy 1Open Targets
0.75Strong
genetic disorderOpen Targets
0.52Moderate
neurodegenerative diseaseOpen Targets
0.49Moderate
Smith-Magenis syndromeOpen Targets
0.43Moderate
atypical glycine encephalopathyOpen Targets
0.37Weak
infantile glycine encephalopathyOpen Targets
0.37Weak
neonatal glycine encephalopathyOpen Targets
0.37Weak
SeizureOpen Targets
0.37Weak
asthmaOpen Targets
0.36Weak
obesityOpen Targets
0.35Weak
Global developmental delayOpen Targets
0.34Weak
generalized epilepsyOpen Targets
0.34Weak
retinitis pigmentosaOpen Targets
0.34Weak
cardiomyopathyOpen Targets
0.29Weak
Alzheimer diseaseOpen Targets
0.28Weak
Abnormal brain morphologyOpen Targets
0.27Weak
knee fractureOpen Targets
0.25Weak
chronic rhinosinusitisOpen Targets
0.23Weak
chronic rhinosinusitis with nasal polypsOpen Targets
0.23Weak
Non-ketotic hyperglycinemiaUniProt
Pathogenic Variants489
NM_000170.3(GLDC):c.499G>T (p.Glu167Ter)Pathogenic
Glycine encephalopathy|Inborn genetic diseases|not provided|GLDC-related disorder|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2026β†’ Residue 167
NM_000170.3(GLDC):c.1054del (p.Thr352fs)Pathogenic
Glycine encephalopathy|not provided|GLDC-related disorder|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2026β†’ Residue 352
NM_000170.3(GLDC):c.2678C>T (p.Pro893Leu)Pathogenic
Glycine encephalopathy
β˜…β˜…β˜†β˜†2026β†’ Residue 893
NM_000170.3(GLDC):c.1545G>C (p.Arg515Ser)Pathogenic
Glycine encephalopathy|Generalized epilepsy;Obesity;Global developmental delay|not provided|GLDC-related disorder|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2026β†’ Residue 515
NM_000170.3(GLDC):c.2498C>T (p.Ala833Val)Pathogenic
not provided|Glycine encephalopathy|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2026β†’ Residue 833
NM_000170.3(GLDC):c.799C>G (p.Pro267Ala)Pathogenic
Glycine encephalopathy|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2026β†’ Residue 267
NM_000170.3(GLDC):c.2203-2A>GPathogenic
Glycine encephalopathy|not provided|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2026
NM_000170.3(GLDC):c.1786C>T (p.Arg596Ter)Pathogenic
Glycine encephalopathy|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2026β†’ Residue 596
NM_000170.3(GLDC):c.2183G>A (p.Gly728Glu)Pathogenic
Glycine encephalopathy
β˜…β˜…β˜†β˜†2026β†’ Residue 728
NM_000170.3(GLDC):c.1952A>G (p.His651Arg)Pathogenic
Glycine encephalopathy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 651
NM_000170.3(GLDC):c.2489C>T (p.Thr830Met)Pathogenic
Glycine encephalopathy
β˜…β˜…β˜†β˜†2025β†’ Residue 830
NM_000170.3(GLDC):c.1270C>T (p.Arg424Ter)Pathogenic
Glycine encephalopathy|Glycine encephalopathy 1|GLDC-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 424
NM_000170.3(GLDC):c.1691G>T (p.Ser564Ile)Pathogenic
Glycine encephalopathy|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2025β†’ Residue 564
NM_000170.3(GLDC):c.1166C>T (p.Ala389Val)Pathogenic
Glycine encephalopathy|not provided|Glycine encephalopathy 1|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 389
NM_000170.3(GLDC):c.2879G>A (p.Trp960Ter)Pathogenic
Glycine encephalopathy|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2025β†’ Residue 960
NM_000170.3(GLDC):c.2962C>T (p.Arg988Trp)Pathogenic
Glycine encephalopathy|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2025β†’ Residue 988
NM_000170.3(GLDC):c.2527C>T (p.Arg843Ter)Pathogenic
Glycine encephalopathy|not provided|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2025β†’ Residue 843
NM_000170.3(GLDC):c.1009C>T (p.Arg337Ter)Pathogenic
Glycine encephalopathy|not provided|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2025β†’ Residue 337
NM_000170.3(GLDC):c.1444dup (p.Asp482fs)Pathogenic
Glycine encephalopathy
β˜…β˜…β˜†β˜†2025β†’ Residue 482
NM_000170.3(GLDC):c.1852G>A (p.Gly618Arg)Pathogenic
Glycine encephalopathy|Retinitis pigmentosa|Glycine encephalopathy 1
β˜…β˜…β˜†β˜†2025β†’ Residue 618
View on ClinVar β†—
Related Genes
DLSTProtein interaction100%DLATProtein interaction100%PDHXProtein interaction100%MTHFD1Protein interaction100%AGXTProtein interaction100%AMTProtein interaction100%
Tissue Expression6 tissues
Liver
100%
Brain
3%
Bone Marrow
1%
Lung
0%
Ovary
0%
Heart
0%
Gene Interaction Network
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GLDCDLSTDLATPDHXMTHFD1AGXTAMT
PROTEIN STRUCTURE
Preparing viewer…
PDB6I35 Β· 2.00 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.09LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.89 [0.73–1.09]
RankingsWhere GLDC stands among ~20K protein-coding genes
  • #6,631of 20,598
    Most Researched71
  • #112of 5,498
    Most Pathogenic Variants489 Β· top 5%
  • #11,100of 17,882
    Most Constrained (LOEUF)1.09
Genes detectedGLDC
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
The genetic basis of classic nonketotic hyperglycinemia due to mutations in GLDC and AMT.
PMID: 27362913
Genet Med Β· 2017
1.00
2
Identification and characterization of GLDC as host susceptibility gene to severe influenza.
PMID: 30498026
EMBO Mol Med Β· 2019
0.90
3
GLDC alleviates cisplatin-induced apoptosis, cellular senescence, and production of reactive oxygen species via regulating UCP1 in the kidney.
PMID: 40010632
Life Sci Β· 2025
0.80
4
Identification of a new
PMID: 31773974
Future Oncol Β· 2019
0.70
5
GLDC attenuates liver ischemia-reperfusion injury by inhibiting macrophage recruitment and activation via PTBP1/P2RY6.
PMID: 40617371
Cell Signal Β· 2025
0.60