HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
GNLY
granulysin
Chromosome 2 · 2p11.2
NCBI Gene: 10578Ensembl: ENSG00000115523.17HGNC: HGNC:4414UniProt: B4E3H9
87PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytolytic granuleprotein bindingcellular defense responsekilling of cells of another organismcataractTownes-Brocks syndromeVitiligohalo nevus
✦AI Summary

GNLY (granulysin) is an antimicrobial protein expressed by natural killer cells and activated T lymphocytes that exhibits broad-spectrum cytolytic activity against microbes and tumors 1. The protein functions as an effector molecule in various cytotoxic T cell subsets, particularly in CD8+ effector memory T cells and CD4+ effector T cells 23. In immune surveillance, GNLY+ T cells serve as key markers of cytotoxic function - GNLY+CD8+ effector memory T cells show high clonal expansion and distinct functional signatures across different age groups 4, while GNLY+ CD4+ T cells are associated with enhanced immune responses in conditions like checkpoint inhibitor colitis 5. The protein plays crucial roles in antimicrobial immunity, with GNLY+ T cell populations expanded during viral infections like COVID-19, where intensive expansion of CD4+ and CD8+ effector-GNLY subsets is associated with disease convalescence 2. Additionally, CX3CR1+GNLY+ central memory CD8+ T cells serve as potential surrogate markers for viral resolution in hepatitis B infection 6. Clinically, granulysin expression levels in NK cells correlate with favorable cancer outcomes, suggesting its utility as both a diagnostic marker and therapeutic target 17.

Sources cited
1
Granulysin is expressed by NK cells and activated T lymphocytes with cytolytic activity against microbes and tumors, and its expression correlates with good cancer outcomes
PMID: 14499265
2
GNLY+ T cell subsets (CD4+ effector-GNLY, CD8+ effector-GNLY) are expanded during COVID-19 convalescence
PMID: 32788748
3
GNLY+CD8+ effector memory T cells exhibit high clonal expansion and distinct functional signatures across age groups
PMID: 39881000
4
Cytotoxic GNLY+ CD4+ T cells are expanded in checkpoint inhibitor colitis
PMID: 38724705
5
CX3CR1+GNLY+ central memory CD8+ T cells serve as potential markers for viral resolution in hepatitis B
PMID: 35361683
6
CD8+ effector T cells express GNLY among other effector molecules in myocardial infarction patients
PMID: 35844519
7
GNLY+CD44+CD9+ T cells are characterized as tumor-reactive T cells with effector memory-like phenotypes
PMID: 40513558
Disease Associationsⓘ20
cataractOpen Targets
0.12Weak
Townes-Brocks syndromeOpen Targets
0.10Weak
VitiligoOpen Targets
0.09Suggestive
halo nevusOpen Targets
0.08Suggestive
pulmonary tuberculosisOpen Targets
0.08Suggestive
vertebral column disorderOpen Targets
0.06Suggestive
neoplasmOpen Targets
0.06Suggestive
brain aneurysmOpen Targets
0.06Suggestive
psoriasisOpen Targets
0.06Suggestive
alcohol drinkingOpen Targets
0.05Suggestive
cancerOpen Targets
0.04Suggestive
toxic epidermal necrolysisOpen Targets
0.04Suggestive
SepsisOpen Targets
0.04Suggestive
infectionOpen Targets
0.04Suggestive
open-angle glaucomaOpen Targets
0.04Suggestive
diabetes mellitusOpen Targets
0.03Suggestive
primary biliary cirrhosisOpen Targets
0.03Suggestive
rheumatoid arthritisOpen Targets
0.03Suggestive
Aarskog-Scott syndrome, X-linkedOpen Targets
0.03Suggestive
Extramammary Paget DiseaseOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NOTCH1Protein interaction100%FASLGProtein interaction100%CTSWProtein interaction96%KLRB1Protein interaction96%CD3DProtein interaction95%CD8AProtein interaction95%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
57%
Liver
27%
Heart
9%
Brain
4%
Ovary
3%
Gene Interaction Network
Click a node to explore
GNLYNOTCH1FASLGCTSWKLRB1CD3DCD8A
PROTEIN STRUCTURE
Preparing viewer…
PDB1L9L · 0.92 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.55LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.92 [0.57–1.55]
RankingsWhere GNLY stands among ~20K protein-coding genes
  • #5,480of 20,598
    Most Researched87
  • #15,447of 17,882
    Most Constrained (LOEUF)1.55
Genes detectedGNLY
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry.
PMID: 31061532
Nat Immunol · 2019
1.00
2
Single-cell RNA sequencing reveals intrahepatic and peripheral immune characteristics related to disease phases in HBV-infected patients.
PMID: 35361683
Gut · 2023
0.90
3
Integrating single-cell RNA and T cell/B cell receptor sequencing with mass cytometry reveals dynamic trajectories of human peripheral immune cells from birth to old age.
PMID: 39881000
Nat Immunol · 2025
0.80
4
An organoid co-culture model for probing systemic anti-tumor immunity in lung cancer.
PMID: 40513558
Cell Stem Cell · 2025
0.70
5
Single-cell landscape of immunological responses in patients with COVID-19.
PMID: 32788748
Nat Immunol · 2020
0.60