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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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GNPNAT1
glucosamine-phosphate N-acetyltransferase 1
Chromosome 14 Β· 14q22.1
NCBI Gene: 64841Ensembl: ENSG00000100522.11HGNC: HGNC:19980UniProt: Q96EK6
30PubMed Papers
21Diseases
0Drugs
1Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
identical protein bindingprotein bindingglucosamine 6-phosphate N-acetyltransferase activitycytosolrhizomelic dysplasia, Ain-Naz typeendocarditischronic fatigue syndromelung adenocarcinoma
✦AI Summary

GNPNAT1 encodes glucosamine-phosphate N-acetyltransferase 1, a crucial enzyme in the hexosamine biosynthesis pathway that catalyzes the conversion of glucosamine-6-phosphate to N-acetylglucosamine-6-phosphate 1. This enzyme is essential for the synthesis of uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc), which participates in protein glycosylation processes 2. GNPNAT1 operates through its acetyltransferase activity and is involved in multiple cellular processes including cell cycle regulation, ribosome function, and RNA transport 3. The protein localizes to the cytosol and exhibits protein binding capabilities 2. Disease relevance includes a novel autosomal recessive skeletal dysplasia termed rhizomelic dysplasia, Ain-Naz type, caused by biallelic GNPNAT1 variants 24. Affected individuals present with severe short stature, rhizomelic limb shortening, hip dysplasia, and platyspondyly 24. Functional studies demonstrate that GNPNAT1 is critical for growth plate chondrocyte proliferation and differentiation 2. Additionally, GNPNAT1 overexpression is associated with poor prognosis in multiple cancers, including breast cancer and lung adenocarcinoma, where it promotes cancer cell stemness and correlates with immune infiltration patterns 563. Clinically, GNPNAT1 serves as a potential biomarker for cancer prognosis and may represent a therapeutic target 53.

Sources cited
1
GNPNAT1 is involved in hexosamine biosynthesis pathway and UDP-GlcNAc synthesis
PMID: 31204557
2
GNPNAT1 encodes glucosamine-phosphate N-acetyltransferase and causes rhizomelic skeletal dysplasia
PMID: 32591345
3
Biallelic GNPNAT1 variants cause Ain-Naz type rhizomelic dysplasia with severe skeletal phenotype
PMID: 36097642
4
GNPNAT1 regulates cell cycle, ribosome, and RNA transport pathways
PMID: 33178836
5
GNPNAT1 overexpression correlates with poor prognosis and immune infiltration in breast cancer
PMID: 37215111
6
GNPNAT1 promotes cancer stem cell properties in breast cancer
PMID: 37387422
7
GNPNAT1 is essential for growth plate chondrocyte proliferation and differentiation
PMID: 32591345
Disease Associationsβ“˜21
rhizomelic dysplasia, Ain-Naz typeOpen Targets
0.50Moderate
endocarditisOpen Targets
0.28Weak
chronic fatigue syndromeOpen Targets
0.27Weak
lung adenocarcinomaOpen Targets
0.11Weak
Alzheimer diseaseOpen Targets
0.11Weak
breast cancerOpen Targets
0.10Suggestive
neurodegenerative diseaseOpen Targets
0.10Suggestive
prostate carcinomaOpen Targets
0.09Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
lung cancerOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.07Suggestive
prostate cancerOpen Targets
0.06Suggestive
hypertensionOpen Targets
0.05Suggestive
atrial fibrillationOpen Targets
0.05Suggestive
Abnormality of the skeletal systemOpen Targets
0.04Suggestive
hypertrophic cardiomyopathyOpen Targets
0.04Suggestive
cancerOpen Targets
0.04Suggestive
Abruptio PlacentaeOpen Targets
0.03Suggestive
triple-negative breast cancerOpen Targets
0.03Suggestive
carcinomaOpen Targets
0.03Suggestive
Rhizomelic dysplasia, Ain-Naz typeUniProt
Pathogenic Variants1
NM_198066.4(GNPNAT1):c.226G>A (p.Glu76Lys)Pathogenic
Rhizomelic dysplasia, Ain-Naz type
β˜†β˜†β˜†β˜†2021β†’ Residue 76
View on ClinVar β†—
Related Genes
UAP1L1Shared pathway100%HK1Protein interaction94%HK3Protein interaction93%HKDC1Protein interaction93%HK2Protein interaction93%GPD1Protein interaction73%
Tissue Expression6 tissues
Liver
100%
Brain
66%
Heart
24%
Ovary
24%
Lung
21%
Bone Marrow
12%
Gene Interaction Network
Click a node to explore
GNPNAT1UAP1L1HK1HK3HKDC1HK2GPD1
PROTEIN STRUCTURE
Preparing viewer…
PDB2O28 Β· 1.80 Γ… Β· X-ray
View on RCSB β†—
RankingsWhere GNPNAT1 stands among ~20K protein-coding genes
  • #11,930of 20,598
    Most Researched30
  • #5,264of 5,498
    Most Pathogenic Variants1
Genes detectedGNPNAT1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
GNPNAT1 is a potential biomarker correlated with immune infiltration and immunotherapy outcome in breast cancer.
PMID: 37215111
Front Immunol Β· 2023
1.00
2
A novel variant in GNPNAT1 gene causing a spondylo-epi-metaphyseal dysplasia resembling PGM3-Desbuquois like dysplasia.
PMID: 36097642
Am J Med Genet A Β· 2022
0.90
3
Proteome-wide Mendelian randomization identifies causal plasma proteins in prostate cancer development.
PMID: 39994764
Hum Genomics Β· 2025
0.80
4
GNPNAT1 promotes the stemness of breast cancer and serves as a potential prognostic biomarker.
PMID: 37387422
Oncol Rep Β· 2023
0.70
5
Potential role of glucosamine-phosphate N-acetyltransferase 1 in the development of lung adenocarcinoma.
PMID: 33686019
Aging (Albany NY) Β· 2021
0.60