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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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GPD2
glycerol-3-phosphate dehydrogenase 2
Chromosome 2 · 2q24.1
NCBI Gene: 2820Ensembl: ENSG00000115159.18HGNC: HGNC:4456UniProt: P43304
92PubMed Papers
20Diseases
2Drugs
1Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
CLINICAL
FDA Approved Target
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
mitochondrionglycerol-3-phosphate dehydrogenase (quinone) activityglycerol-3-phosphate metabolic processglycerol-3-phosphate shuttletype 2 diabetes mellitusdiabetes mellitussleep apneaobstructive sleep apnea
✦AI Summary

GPD2 encodes the mitochondrial glycerol-3-phosphate dehydrogenase 2, a FAD-linked enzyme that serves as the mitochondrial component of the glycerol-3-phosphate shuttle (G3PS) 1. This enzyme catalyzes the oxidation of glycerol-3-phosphate to dihydroxyacetone phosphate in mitochondria, functioning as part of an NADH shuttle system that bridges glucose and lipid metabolism 1. Beyond its traditional bioenergetic role, GPD2 plays critical non-bioenergetic functions in cancer progression by supplying dihydroxyacetone phosphate for ether lipid biosynthesis, which activates the Akt/mTORC1 pathway to promote tumor growth 2. In hepatocellular carcinoma, GPD2 regulates mitochondrial respiration and controls cell migration and invasion through interaction with SPARC protein 3. The enzyme also maintains cancer stem cell properties, as GPD2 knockdown reduces sphere formation ability in both hepatocellular carcinoma and neuroblastoma cell lines 4. Additionally, GPD2 influences platelet function through ROS/NF-κB/P2Y12 signaling pathways, with hypermethylation of its promoter affecting coagulation function and bleeding risk 5. GPD2 expression is upregulated in various cancers and associated with poor prognosis, making it a potential therapeutic target 36.

Sources cited
1
GPD2 is FAD-linked enzyme that functions as mitochondrial component of glycerol-3-phosphate shuttle bridging glucose and lipid metabolism
PMID: 38689091
2
GPD2 has non-bioenergetic roles supplying DHAP for ether lipid biosynthesis and activating Akt/mTORC1 pathway in cancer
PMID: 36632231
3
GPD2 regulates mitochondrial respiration and controls HCC cell migration/invasion through SPARC interaction
PMID: 38334876
4
GPD2 maintains cancer stem cell properties in hepatocellular carcinoma and neuroblastoma cell lines
PMID: 36592694
5
GPD2 influences platelet function through ROS/NF-κB/P2Y12 pathways with promoter methylation affecting coagulation
PMID: 40682019
6
GPD2 expression serves as biomarker in oral squamous cell carcinoma associated with tobacco use
PMID: 38851780
Disease Associationsⓘ20
type 2 diabetes mellitusOpen Targets
0.71Strong
diabetes mellitusOpen Targets
0.62Moderate
sleep apneaOpen Targets
0.43Moderate
obstructive sleep apneaOpen Targets
0.42Moderate
polycystic ovary syndromeOpen Targets
0.41Moderate
obesityOpen Targets
0.41Moderate
gestational diabetesOpen Targets
0.41Moderate
Insulin resistanceOpen Targets
0.41Moderate
myopiaOpen Targets
0.40Moderate
prediabetes syndromeOpen Targets
0.40Weak
metabolic syndromeOpen Targets
0.39Weak
type 1 diabetes mellitusOpen Targets
0.39Weak
systemic lupus erythematosusOpen Targets
0.39Weak
Disorder of lipid metabolismOpen Targets
0.38Weak
agingOpen Targets
0.37Weak
prostate cancerOpen Targets
0.37Weak
COVID-19Open Targets
0.37Weak
peptic ulcer diseaseOpen Targets
0.36Weak
abnormal glucose toleranceOpen Targets
0.36Weak
chronic obstructive pulmonary diseaseOpen Targets
0.35Weak
Pathogenic Variants1
NM_000408.5(GPD2):c.1904T>C (p.Phe635Ser)Pathogenic
Type 2 diabetes mellitus
☆☆☆☆1997→ Residue 635
View on ClinVar ↗
Drug Targets2
METFORMINApproved
Mitochondrial complex I (NADH dehydrogenase) inhibitor
diabetes mellitus
METFORMIN HYDROCHLORIDEApproved
Mitochondrial complex I (NADH dehydrogenase) inhibitor
type 2 diabetes mellitus
Related Genes
NDUFS8Protein interaction100%SDHBProtein interaction100%SDHCProtein interaction100%GPAMProtein interaction100%UQCRFS1Protein interaction99%PLPP2Protein interaction98%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
71%
Heart
34%
Lung
34%
Ovary
26%
Liver
10%
Gene Interaction Network
Click a node to explore
GPD2NDUFS8SDHBSDHCGPAMUQCRFS1PLPP2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P43304
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.80LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.57 [0.41–0.80]
RankingsWhere GPD2 stands among ~20K protein-coding genes
  • #5,186of 20,598
    Most Researched92
  • #608of 1,025
    FDA-Approved Drug Targets2
  • #4,913of 5,498
    Most Pathogenic Variants1
  • #6,592of 17,882
    Most Constrained (LOEUF)0.80
Genes detectedGPD2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
GPD2 inhibition impairs coagulation function via ROS/NF-κB/P2Y12 pathway.
PMID: 40682019
Cell Mol Biol Lett · 2025
1.00
2
Histone Lactylation-Driven GPD2 Mediates M2 Macrophage Polarization to Promote Malignant Transformation of Cervical Cancer Progression.
PMID: 39504115
DNA Cell Biol · 2024
0.90
3
Uncoupled glycerol-3-phosphate shuttle in kidney cancer reveals that cytosolic GPD is essential to support lipid synthesis.
PMID: 37084714
Mol Cell · 2023
0.80
4
GPD2: The relationship with cancer and neural stemness.
PMID: 36592694
Cells Dev · 2023
0.70
5
Glycerol 3-phosphate dehydrogenases (1 and 2) in cancer and other diseases.
PMID: 38689091
Exp Mol Med · 2024
0.60