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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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GYS2
glycogen synthase 2
Chromosome 12 Β· 12p12.1
NCBI Gene: 2998Ensembl: ENSG00000111713.4HGNC: HGNC:4707UniProt: P54840
30PubMed Papers
21Diseases
0Drugs
45Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activityglycogen biosynthetic processcytoplasmcytosolGlycogen storage disease due to hepatic glycogen synthase deficiencyglycogen storage disorder due to hepatic glycogen synthase deficiencydisorder of glycogen metabolismGlycogen storage disease due to glycogenin deficiency
✦AI Summary

GYS2 (glycogen synthase 2) catalyzes hepatic glycogen biosynthesis by transferring glucose units from UDP-glucose to the non-reducing end of alpha-1,4-glucan chains, extending glycogen primers initiated by glycogenin 1. Beyond its metabolic role, GYS2 functions as a tumor suppressor through a negative feedback loop with p53; GYS2 competitively binds MDM2 to prevent p53 ubiquitination and degradation, while p53 simultaneously represses GYS2 transcription, creating a circuit that maintains cellular homeostasis and restricts hepatocellular carcinoma (HCC) progression 23. GYS2 is a BMAL1-regulated circadian gene whose rhythmic expression patterns are disrupted in liver disease progression, and GYS2 overexpression inhibits HepG2 cell proliferation and migration while elevating p53 expression 4. Additionally, GYS2 represents one of several glycolytic negative regulators inversely associated with the Warburg effect in HCC 5. Mutations in GYS2 cause glycogen storage disease type 0 (GSD0), a rare autosomal recessive disorder characterized by hepatic glycogen synthase deficiency, hyperketotic hypoglycemia, and neurocognitive complications that can be managed through dietary intervention 16. GYS2 also participates in glycogen metabolic reprogramming that supports M2 macrophage polarization and thermogenic remodeling of adipocytes 78.

Sources cited
1
GYS2 (glycogen synthase 2) catalyzes hepatic glycogen biosynthesis by transferring glucose units from UDP-glucose to the non-reducing end of alpha-1,4-glucan chains, extending glycogen primers initiated by glycogenin .
PMID: 32779500
2
GYS2 is a BMAL1-regulated circadian gene whose rhythmic expression patterns are disrupted in liver disease progression, and GYS2 overexpression inhibits HepG2 cell proliferation and migration while elevating p53 expression .
PMID: 38183795
3
Additionally, GYS2 represents one of several glycolytic negative regulators inversely associated with the Warburg effect in HCC .
PMID: 37215979
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
Glycogen storage disease due to hepatic glycogen synthase deficiencyOpen Targets
0.82Strong
glycogen storage disorder due to hepatic glycogen synthase deficiencyOpen Targets
0.81Strong
disorder of glycogen metabolismOpen Targets
0.63Moderate
Glycogen storage disease due to glycogenin deficiencyOpen Targets
0.50Moderate
infectious diseaseOpen Targets
0.32Weak
Ischemic strokeOpen Targets
0.27Weak
type 2 diabetes mellitusOpen Targets
0.21Weak
genetic disorderOpen Targets
0.19Weak
diabetes mellitusOpen Targets
0.18Weak
schizophreniaOpen Targets
0.11Weak
MODYOpen Targets
0.11Weak
type 1 diabetes mellitusOpen Targets
0.10Weak
maturity-onset diabetes of the young type 4Open Targets
0.08Suggestive
maturity-onset diabetes of the young type 2Open Targets
0.08Suggestive
maturity-onset diabetes of the young type 6Open Targets
0.08Suggestive
diabetes mellitus, transient neonatal, 2Open Targets
0.08Suggestive
maturity-onset diabetes of the young type 3Open Targets
0.08Suggestive
intrahepatic cholangiocarcinomaOpen Targets
0.07Suggestive
maturity-onset diabetes of the young type 10Open Targets
0.07Suggestive
3-hydroxy-3-methylglutaryl-CoA synthase deficiencyOpen Targets
0.07Suggestive
Glycogen storage disease 0UniProt
Pathogenic Variants45
NM_021957.4(GYS2):c.736C>T (p.Arg246Ter)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency|Glycogen storage disease|not provided|See cases|GYS2-related disorder|Thymoma
β˜…β˜…β˜†β˜†2025β†’ Residue 246
NM_021957.4(GYS2):c.574C>T (p.Arg192Ter)Pathogenic
not provided|Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 192
NM_021957.4(GYS2):c.495+1G>TPathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency|See cases
β˜…β˜…β˜†β˜†2025
NM_021957.4(GYS2):c.122-8_186delinsATCAGALikely pathogenic
not provided|Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2025
NM_021957.4(GYS2):c.1015G>C (p.Ala339Pro)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 339
NM_021957.4(GYS2):c.1557_1579del (p.Thr520fs)Pathogenic
GYS2-related disorder|Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 520
NM_021957.4(GYS2):c.116A>G (p.Asn39Ser)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 39
NM_021957.4(GYS2):c.457del (p.Met152_Leu153insTer)Pathogenic
not provided|Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 152
NM_021957.4(GYS2):c.547C>T (p.Gln183Ter)Pathogenic
not provided|Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 183
NM_021957.4(GYS2):c.439C>T (p.Arg147Ter)Likely pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 147
NM_021957.4(GYS2):c.465del (p.Phe155fs)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2024β†’ Residue 155
NM_021957.4(GYS2):c.1436C>A (p.Pro479Gln)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 479
NM_021957.4(GYS2):c.1413_1416del (p.Asp471fs)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2022β†’ Residue 471
NM_021957.4(GYS2):c.1156C>T (p.Arg386Ter)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜…β˜†β˜†2020β†’ Residue 386
NM_021957.4(GYS2):c.1081del (p.Thr361fs)Pathogenic
Glycogen storage disease|not provided
β˜…β˜…β˜†β˜†2018β†’ Residue 361
NM_021957.4(GYS2):c.1062+1G>TPathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency|GYS2-related disorder
β˜…β˜…β˜†β˜†2017
NM_021957.4(GYS2):c.678+1G>TLikely pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜†β˜†β˜†2025
NM_021957.4(GYS2):c.1264C>T (p.Arg422Ter)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 422
NM_021957.4(GYS2):c.1209dup (p.Leu404fs)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 404
NM_021957.4(GYS2):c.376_377del (p.Asn126fs)Pathogenic
Glycogen storage disorder due to hepatic glycogen synthase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 126
View on ClinVar β†—
Related Genes
PRKAG1Protein interaction100%PRKAA2Protein interaction100%PRKAA1Protein interaction100%PRKAG2Protein interaction100%PRKAB1Protein interaction100%PPP1CCProtein interaction96%
Tissue Expression6 tissues
Liver
100%
Brain
0%
Lung
0%
Ovary
0%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
GYS2PRKAG1PRKAA2PRKAA1PRKAG2PRKAB1PPP1CC
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P54840
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.28LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.02 [0.82–1.28]
RankingsWhere GYS2 stands among ~20K protein-coding genes
  • #11,935of 20,598
    Most Researched30
  • #1,433of 5,498
    Most Pathogenic Variants45
  • #13,460of 17,882
    Most Constrained (LOEUF)1.28
Genes detectedGYS2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Identification of BMAL1-Regulated circadian genes in mouse liver and their potential association with hepatocellular carcinoma: Gys2 and Upp2 as promising candidates.
PMID: 38183795
Biochem Biophys Res Commun Β· 2024
1.00
2
A patient with glycogen storage disease type 0 and a novel sequence variant in
PMID: 32779500
J Int Med Res Β· 2020
0.90
3
[Glycogen storage syndrome type 0 caused by GYS2 gene variation and phenotypic differences between two siblings].
PMID: 34729754
Zhonghua Yi Xue Yi Chuan Xue Za Zhi Β· 2021
0.80
4
ACE2 negatively regulates the Warburg effect and suppresses hepatocellular carcinoma progression via reducing ROS-HIF1Ξ± activity.
PMID: 37215979
Int J Biol Sci Β· 2023
0.70
5
PPP1R3B Suppresses Atherosclerosis by Promoting the M2 Polarization of Macrophages Through Glycogen Metabolic Reprogramming.
PMID: 40984828
Adv Sci (Weinh) Β· 2025
0.60